Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I22
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 665 SRRPPNAGPAAASNMTAGSLGRRAKSPIDSAAXHLPP 555
           S+ PPN G +  S ++  +L    +SP   A   LPP
Sbjct: 378 SQPPPNFGVSQVSPVSMSALVSAVRSP---AGGQLPP 411


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115  IVLRSQ-YSHNGCPTLQTETHYCFTAEIGWAVVPTRADSQ 231
            +VLR   +  NGCP L     Y    E  W +V      Q
Sbjct: 1515 LVLRLHVWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1554


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115  IVLRSQ-YSHNGCPTLQTETHYCFTAEIGWAVVPTRADSQ 231
            +VLR   +  NGCP L     Y    E  W +V      Q
Sbjct: 1511 LVLRLHVWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1550


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 112 DIVLRSQYSHNGCPTLQTETHYCFTAEIGW 201
           DIVL +    N   TL T+    +T ++ W
Sbjct: 119 DIVLYNNADGNYEVTLMTKATLKYTGDVSW 148


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 477 LRAPPALCGKEPRRGAAL 530
           +RAP  +C  E R+G  L
Sbjct: 114 MRAPSFICENETRQGLTL 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,303
Number of Sequences: 438
Number of extensions: 5049
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)