Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_I17
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 192 4e-50
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 192 6e-50
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 29 0.75
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.99
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 26 5.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 192 bits (469), Expect = 4e-50
Identities = 93/135 (68%), Positives = 104/135 (77%)
Frame = -1
Query: 773 ENPADVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 594
ENPADV V SSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP
Sbjct: 72 ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131
Query: 593 QDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 414
D Q I EAS+ NIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGN 191
Query: 413 LPRDQRWDVVVDLFF 369
+ R W+V+ DL+F
Sbjct: 192 ISRTTAWEVMPDLYF 206
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 192 bits (467), Expect = 6e-50
Identities = 92/135 (68%), Positives = 104/135 (77%)
Frame = -1
Query: 773 ENPADVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 594
ENPADV V S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP
Sbjct: 71 ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130
Query: 593 QDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 414
D Q I EAS+ NIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGT 190
Query: 413 LPRDQRWDVVVDLFF 369
L R WDV+ DL+F
Sbjct: 191 LSRSAPWDVMPDLYF 205
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 623 PRLLIVLDPAQDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 443 AR 438
+R
Sbjct: 240 SR 241
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.75
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +3
Query: 573 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNXRSTGVRGKLQYSTLTEGP**XD 752
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 753 XHISGVLXG 779
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 575 TEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 351 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 494
L G+R +QI +P KH + F Q+ N VG GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 635 AFREPRLLIVLDPAQDHQPITEASYA 558
A R+ RLL+++ P H P+ YA
Sbjct: 62 AGRDDRLLLIVGPCSLHDPVAAKEYA 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,828
Number of Sequences: 5004
Number of extensions: 57761
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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