Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I16
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    97   2e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    96   6e-21
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    93   5e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.54 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    28   1.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.8  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   5.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.1  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    26   5.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    26   6.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.9  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 40/69 (57%), Positives = 61/69 (88%)
 Frame = -3

Query: 455 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 276
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 275 KLSSMPVGG 249
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 41/69 (59%), Positives = 61/69 (88%)
 Frame = -3

Query: 455 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 276
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 275 KLSSMPVGG 249
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 38/69 (55%), Positives = 61/69 (88%)
 Frame = -3

Query: 455 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 276
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 275 KLSSMPVGG 249
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +1

Query: 319 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 447
           SSV T LS SAS+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +1

Query: 271 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 441
           SF+ PA+ S  TSL  SS     S SAS +  +   + S+S+A+    P S++S +A
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 304 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 438
           + L + S  T +S S+  S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 271 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 429
           SF  P+A +   S P+SS+ +F + SA+++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 289 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 432
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 532 ASRPTVLEEFRTGTS-LLFCTNLFYSVT*IGLMVIAVSCVKLLSVPRPRLKSGGWIGPGC 708
           A R T++ EFRTG+S +L  T+L       G+ V  VS V    +P  R      IG G 
Sbjct: 295 AQRDTLMHEFRTGSSRILITTDLLAR----GIDVQQVSLVINYDLPANRENYIHRIGRGG 350

Query: 709 FYGGQXAWMXF 741
            +G +   + F
Sbjct: 351 RFGRKGVSINF 361


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 389  VEKILSSVGIEADAEKLKKVITELNG 312
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 555 LEHCWPT-GLLVDVCSRRTLFFRHYTFRVN*DLKNALR 445
           LEH + + G ++DV +R+TL  R   F V  +L+NA R
Sbjct: 46  LEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 304 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 447
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 503 VRLEQTSTSKPVGQQCSRNSGPVPACFFVQ 592
           VRL+ TS + P+  +    + P+P C  ++
Sbjct: 14  VRLKSTSATSPITYKALHANSPLPRCRIIE 43


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 253 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPS 423
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 424 TASKYAAT 447
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +1

Query: 247 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 414
           PPP     SFS    I+ ++ +P SS  T  +    ++ S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 415 PPS 423
           P S
Sbjct: 246 PTS 248


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 121 TKLYKSTRRWSLFQFMF 71
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,188
Number of Sequences: 5004
Number of extensions: 41928
Number of successful extensions: 134
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)