Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I14
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    30   0.31 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   0.54 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   2.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.9  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   8.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   8.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 609  KVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTQGVDRE 430
            +V A+ S +     +RR+   PE N R LR+R       TP  E   ++D ++ +   R+
Sbjct: 1374 RVEARSSANERKQEERRRKTTPEGNRRALRTR-------TPTNEDIQRSDSKLREDQSRD 1426

Query: 429  R 427
            R
Sbjct: 1427 R 1427


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = -1

Query: 651 REP*R-SDGTQVAFPKVRAK-KSKDSPVPRKRRKVDAPEANER-QLRSRGKRST--PATP 487
           R P R  +G  V  PKV    KS DSPV +     D P A+ R  +RS G  S   P T 
Sbjct: 183 RSPSRLGNGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPPTR 242

Query: 486 VVEKRGKADGRVTQGVDRERKNGPRHSQEEI 394
               R  +   VT       KN    S+ ++
Sbjct: 243 TSTTRPLSRVNVTNASGSISKNSTSPSKVKV 273


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -1

Query: 606 VRAKKSKDSP-VP---RKRRKVDAPEANERQLRSRGKR 505
           + + +S DS  +P   RKRRKV  PE  +  LR RG++
Sbjct: 64  IASSQSNDSAAIPSYRRKRRKVRKPEIVKPTLRKRGRK 101


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 340  TRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSE 206
            T    E   I   K+ T T+N+  +Q+ M +S     E SLS +E
Sbjct: 1611 TEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAE 1655


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 346 RATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEVKS 197
           R   +  E+K +++ +KE  + N +  Q+  +  ++ R+    SPS++KS
Sbjct: 21  RQLNEIQEKKRLRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSKLKS 70


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 576 VPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTQGVDRERKNGPRH 409
           VP+K    +A +   R   S+GK++  +  V +   KA+G       +  KN  +H
Sbjct: 318 VPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQSSLKANGTTAIKKVKAGKNKVKH 373


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 591 SKDSPVPRKRRKV-DAPEANERQLRSRGKRSTPATPVVEKRGKADGRVTQGVD 436
           S DS  P   + V +   A+E+QL     ++TPA     ++ +A+  VT   +
Sbjct: 326 SLDSKQPSSTKSVAEVKVADEKQLPDASSQATPADSKEPRKEEAEKPVTSATE 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,128
Number of Sequences: 5004
Number of extensions: 38818
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)