Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I11
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   0.98 
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    28   1.3  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   2.3  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    27   3.0  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.9  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   9.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.2  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 622 NLHPPAEPEHRRIARHERTGRL 557
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
 Frame = -3

Query: 738 PPXKXXFTGSTXXTRCYSHTEEANREH-LSSTHKHALHRKTCIRQRNPNTAASPDTNAPD 562
           P  +    G+    RC S T    RE  L+            +    P++  S      D
Sbjct: 118 PSVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLD 177

Query: 561 VLSYRSRRLQMCQFF-----FPHGNLLAFLFAYLLEPEVIERV 448
            ++    +   C +F      P  N++ + + YLL+P++ ERV
Sbjct: 178 DITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERV 220


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 552 YRSRRLQMCQFFFPHGNLLAFLFAYLL 472
           Y +R L   Q+F P+G L A +FA LL
Sbjct: 203 YLARFLNSPQYFIPYGTLCANVFATLL 229


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 552 YRSRRLQMCQFFFPHGNLLAFLFAYLL 472
           Y +R L   Q+F P+G L A +FA LL
Sbjct: 203 YLARFLNSPQYFIPYGTLCANVFATLL 229


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 345 STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 166
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 165 RFRSGGRFC 139
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 261 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 121
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 427 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 622 NLHPPAEPEHRRIARHERTGRLILQVTTTSD 530
           +L PP +    R    E+TG L  Q T+TS+
Sbjct: 77  SLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,880
Number of Sequences: 5004
Number of extensions: 54099
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)