Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_I03
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.1  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   8.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.5  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 325 PGPLGQREHADSFSVARVRPRTSKGI 402
           PG LG R  + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 251 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ASENM 352
           L G+P ++G++  P    EG++    G   +EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  VILPQVPLRKPCYDFYFL*MIKFGQLP 119
           V+  ++ L K  + +YF   +KFGQLP
Sbjct: 338 VLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 281 LSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRHIGGF 138
           LS ++   L+   H   LI   P V   R YY L++L+  SD   GGF
Sbjct: 768 LSDLSNLELLFTKHVAVLILH-PLV---RDYYSLDELMEMSDLRKGGF 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,327
Number of Sequences: 5004
Number of extensions: 50622
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)