Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_H17
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   186   4e-48
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   184   9e-48
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   7e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.9  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  186 bits (452), Expect = 4e-48
 Identities = 90/134 (67%), Positives = 101/134 (75%)
 Frame = -1

Query: 759 VXVISSRPFGQRAVXKFAAHTGXTXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 580
           V VISSRP+G RAV KFAAHTG T IAGRFTPG FTN I   +REPRL+IV DP  D Q 
Sbjct: 77  VCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQA 136

Query: 579 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLSAREVLRLRGVLPRDQ 400
           I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+L AREVLRLRG + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 399 RWDVVVDLFFYRXP 358
            W+V+ DL+FYR P
Sbjct: 197 AWEVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  184 bits (449), Expect = 9e-48
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = -1

Query: 759 VXVISSRPFGQRAVXKFAAHTGXTXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 580
           V V+S+R +G RAV KFAAHTG T IAGRFTPG FTN I   +REPRL++V DP  D Q 
Sbjct: 76  VCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQA 135

Query: 579 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLSAREVLRLRGVLPRDQ 400
           I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+L AREVLR+RG L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 399 RWDVVVDLFFYRXP 358
            WDV+ DL+FYR P
Sbjct: 196 PWDVMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 624 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLS 445
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  L 
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 444 AR 439
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 422 VVCFPVTSAGMLWLICSSTVXPEESEKD 339
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 468 IGLMWWLSAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 574 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNXRXTGVRGKLXYSTLTEGP 741
           S GL  L R +   E  F +     +S + W  T +     G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,750
Number of Sequences: 5004
Number of extensions: 57082
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)