Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_H11
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   242   3e-65
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   242   3e-65
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.72 
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    28   1.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   5.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.7  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  242 bits (593), Expect = 3e-65
 Identities = 113/172 (65%), Positives = 134/172 (77%)
 Frame = -2

Query: 623 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 444
           +GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281

Query: 443 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 264
           IYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKR 334

Query: 263 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           ++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 335 VLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = -1

Query: 729 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 616
           ++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  242 bits (593), Expect = 3e-65
 Identities = 113/172 (65%), Positives = 134/172 (77%)
 Frame = -2

Query: 623 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 444
           +GKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281

Query: 443 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKR 264
           IYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKR 334

Query: 263 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           ++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 335 VLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = -1

Query: 729 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGQ 616
           ++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 497
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 589 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 720
           Q  ++ L   P G T +V   + G+  +D ++  Q +S  FH V
Sbjct: 62  QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 629 SPKGKGYKGVTSRWHTKKLPRKTHK 555
           +PK K + G T  WH+   PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 704 PENIWRNLSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKT 561
           PE  W+ +SLS L LPK   +          Y    SR H  KLP++T
Sbjct: 631 PECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 411 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 536
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,630
Number of Sequences: 5004
Number of extensions: 71853
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)