Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_H01
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   6e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   119   5e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    36   0.006
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (294), Expect = 6e-29
 Identities = 61/110 (55%), Positives = 70/110 (63%)
 Frame = -1

Query: 699 TXXTXIXGXFTXXXFXNQIQXAFXEXXXXIVLDPAQDHQPIXEXSYVNIPVIALCNTDSP 520
           T  T I G FT   F N I   + E    +V DP  D Q I E S+VNIPVIALC+TDS 
Sbjct: 96  TGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSI 155

Query: 519 XRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGALPRDQRWDVVVDLFF 370
              VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 156 LNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  119 bits (286), Expect = 5e-28
 Identities = 60/110 (54%), Positives = 69/110 (62%)
 Frame = -1

Query: 699 TXXTXIXGXFTXXXFXNQIQXAFXEXXXXIVLDPAQDHQPIXEXSYVNIPVIALCNTDSP 520
           T  T I G FT   F N I   + E    IV DP  D Q I E S+VNIPVIALC+TDS 
Sbjct: 97  TGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSI 156

Query: 519 XRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGALPRDQRWDVVVDLFF 370
              VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 157 LNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 612 IVLDPAQDHQPIXEXSYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAR 439
           ++L+P ++     E    ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 184 VILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 546 IALCNTDSPXRFVDIAIPCNTKSSHSI 466
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 468 IGLMWWLLAREVLRLRGALPRDQRWD 391
           IGL W L  REV R +    R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,425
Number of Sequences: 5004
Number of extensions: 44660
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)