Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_H01
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 122 4e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 122 4e-28
01_06_0867 - 32586254-32586574,32586756-32587172 31 1.0
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 29 5.4
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 9.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 122 bits (293), Expect = 4e-28
Identities = 56/105 (53%), Positives = 69/105 (65%)
Frame = -1
Query: 684 IXGXFTXXXFXNQIQXAFXEXXXXIVLDPAQDHQPIXEXSYVNIPVIALCNTDSPXRFVD 505
I G T F NQ+Q +F E I+ DP DHQPI E + NIP IA C+TDSP R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 504 IAIPCNTKSSHSIGLMWWLLAREVLRLRGALPRDQRWDVVVDLFF 370
I IP N K SIG ++WLLAR VL++RG + +WDV+VDLFF
Sbjct: 163 IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 122 bits (293), Expect = 4e-28
Identities = 56/105 (53%), Positives = 70/105 (66%)
Frame = -1
Query: 684 IXGXFTXXXFXNQIQXAFXEXXXXIVLDPAQDHQPIXEXSYVNIPVIALCNTDSPXRFVD 505
I G T F NQ+Q +F E I+ DP DHQPI E + NIP IA C+TDSP R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 504 IAIPCNTKSSHSIGLMWWLLAREVLRLRGALPRDQRWDVVVDLFF 370
I IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFF
Sbjct: 163 IGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 337 HPFHFLQG--SRLEEQINHNIPALVTGKRTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 507
H LQG S LE Q+ + AL + T PQHF QP H + + ++ V +D
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197
Query: 508 H 510
H
Sbjct: 198 H 198
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 445 QQPPHQTNRVGRLGVAWDSNVHKSXWGVCVAQS 543
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 348 LSSGVTVRRTNQPQHPSAGHGEAHHEA-STLHVPTTTTSNQ 467
L + V R NQP +A + HEA L VP+ + NQ
Sbjct: 80 LGKVLIVERANQPNSKNANEKQQEHEAQGALQVPSMNSLNQ 120
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 353 FRGHG*KNKSTTTSQRWSRGSAPRSLNTSRANNHHIKP 466
FRG G ++ T ++RG R N NNH +P
Sbjct: 232 FRGRGGGGRTRGTGHGFARGGKYRGYNEDINNNHQNRP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,611
Number of Sequences: 37544
Number of extensions: 313342
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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