Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G23
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.19
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.75
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 29 0.99
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 28 1.7
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 2.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 3.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 3.0
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.3
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 7.0
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 9.2
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 9.2
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 521 PSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMA 342
PS V++ N P ++++EQ++ +FK G + P + G E+ + + + A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 341 IMACNH 324
+ N+
Sbjct: 63 VRNLNN 68
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -2
Query: 497 NTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHAT 318
N P DVS++Q+ ++F G + P G EF + + MA+ N++
Sbjct: 13 NIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSE 72
Query: 317 I 315
+
Sbjct: 73 L 73
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -2
Query: 602 PSFKDYVGNKNNRXLTPASIHKNRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 444
P+ K V +N ++I+++ + PP+KVL N P +V+ + L Q+F+ +
Sbjct: 146 PTHKKPVPKRNVGAERKSTINEDLL-PPNKVLLLQNIPQEVNADVLTQIFEAF 197
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 0.99
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -2
Query: 560 LTPASIHKNRIQPPSKVLHFFNTPP--DVSDEQLLQVFKDYGVTPPHTIS-KFPLKSERS 390
LTP HKN+ HFF+ P VS + L+ G++ +TIS F + +
Sbjct: 177 LTPQETHKNKSFERDDQKHFFDRPAFLTVSTQLHLEALA-LGLSRVYTISPAFRAEQSHT 235
Query: 389 SSGLMEFQNISQSVMAIMACNHAT 318
S L EF + V + + + T
Sbjct: 236 SRHLAEFWMLEAEVAFMTSLSQLT 259
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 723 WNXCPESEQCHRRRLHFDF-GFLKTSVPVRSDEPVSASRQESFVQRLRG*QEQSLXNA 553
WN +SE+ R R F G ++T P R D PVS S+ S +L Q S+ N+
Sbjct: 162 WNLTVDSEKLMRGRADFGLLGIVRTK-PGRPDAPVSWSK--SCTDKLAAKQYLSILNS 216
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 632 MNPYPLPDKSPSFKDYVGNKNNRXLTPASIHKNR 531
+N YPLP P+FK V K N + +S H +
Sbjct: 69 LNSYPLPSAPPNFKS-VCTKTNHPESSSSRHSKK 101
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 525 LYSVLVYRGRR*XAIVLVTHVIFERRTLVGKRI 623
L +V+ + RR AI L V FER T VGK +
Sbjct: 626 LQTVVCTQPRRISAISLAERVAFERDTTVGKEV 658
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 557 TPASIHKNRIQPPSKVLHFFNTPPDVSDEQLLQVF 453
TP + + PP ++ N PP S+E+L +F
Sbjct: 412 TPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLF 446
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = -2
Query: 710 QNLNNVTVGD-YTLTLXFSKQAYLSEVMNPYPLPDKSPS---FKDYVG--NKNNRXLTPA 549
+ L N+ V D Y LTL + + ++ + YPL + + S K+Y G + + +
Sbjct: 892 KTLWNIVVADPYLLTLKLTAEGIFKQLEDCYPLREVTVSNKKVKEYTGFMPVDLQQMVSI 951
Query: 548 SIHK-NRIQPPSKVLHFFNTPPDVSDEQLLQVFKD 447
+H+ N + P FF+ D+ +L+ F D
Sbjct: 952 RLHRFNSLTPIEIAKKFFHCDHDIM--ELVDFFND 984
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 680 YTLTLXFSKQAYLSEVMNPYPLPDKSPSFKDYVGNKNNRXLTPASIHKNRI 528
YTL L SK+ ++MNP +P +DY N++ + P ++ N I
Sbjct: 265 YTLALKTSKRIIYLDIMNPV-----NPDIQDYEFNESPKLSVP-TVEMNMI 309
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -2
Query: 467 LLQVFKDYG-VTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHAT--IQHPG 303
L+ FKD + T SK P S+ SS ++ A+ CN AT I PG
Sbjct: 14 LVSAFKDTSPIFLFSTNSKLPKSSDDSSISTCPMMFFDAAIEALSTCNTATLIIHQPG 71
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 512 VLHFFNTPPDVSDEQLLQ 459
VLHFF T DV D++L +
Sbjct: 819 VLHFFGTMTDVHDQKLAE 836
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 162 LNGEAAQNTNSHISRRKATHTH*PLRVSGGGGRGD 58
++ EA++NT S I R A+H++ P+ + G G+
Sbjct: 420 VHSEASRNTPSSIDRENASHSN-PIMMHGNDFGGN 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,010
Number of Sequences: 5004
Number of extensions: 56296
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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