Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G19
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = -1

Query: 326 AFSKTVASCIAYPHEVARTRLREEGDKYRKFWQTLHTVW 210
           A     A C       A   ++    +Y K W+ L  VW
Sbjct: 67  ALQTNCAKCTEKQRTAAYRSIKRLKKEYPKIWEQLRAVW 105


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 247 LSPSSLNRVLATSC 288
           LSPSSLN   A SC
Sbjct: 158 LSPSSLNGYSADSC 171


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 293 KQCTKRRSSRRHR 331
           K   KR+SSRRHR
Sbjct: 252 KMRPKRQSSRRHR 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,423
Number of Sequences: 336
Number of extensions: 3530
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)