Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G19
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    25   1.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   1.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    24   1.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   10.0 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = -1

Query: 530 CIKRIYAKSGIRGFYKGITASYMGISETVVHFVLYEGVKARLIAARSVDGVASDQRSPRD 351
           C+ +I+   GI G Y+G   S  GI   +++   Y G       AR +  +   +++P  
Sbjct: 162 CLTKIFKADGITGLYRGFGVSVQGI---IIYRAAYFGFYD---TARGM--LPDPKKTP-- 211

Query: 350 FIEFMGAGAFSKTVASCIAYPHEVARTRLREEGDKYRK---FWQTLH---TVWMEEG 198
           F+   G      TVA  ++YP +  R R+  +  + +    +  TLH   T++  EG
Sbjct: 212 FLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = -1

Query: 536 LQCIKRIYAKSGIRGFYKGITASYMGISET-VVHFVLYEGVKARLIAARSVDGVASDQRS 360
           + C  RI  + G   +++G  A+ +    T  ++F   +  K   +      GV  + + 
Sbjct: 57  IDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG-----GVDKNTQF 111

Query: 359 PRDFIEFMGAGAFSKTVASCIAYPHEVARTRLREEGDK 246
            R F+  + +G  +   + C  YP + ARTRL  +  K
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149



 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 542 TALQCIKRIYAKSGIRGFYKGITASYMGISETVVHFVLYEGVK 414
           + L C   IY   G   F+KG  ++ +  +   +  VLY+ +K
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIK 297


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = -1

Query: 530 CIKRIYAKSGIRGFYKGITASYMGISETVVHFVLYEGVKARLIAARSVDGVASDQRSPRD 351
           C+ +I+   GI G Y+G   S  GI   +++   Y G       AR +  +   +++P  
Sbjct: 162 CLTKIFKADGITGLYRGFGVSVQGI---IIYRAAYFGFYD---TARGM--LPDPKKTP-- 211

Query: 350 FIEFMGAGAFSKTVASCIAYPHEVARTRLREEGDKYRK---FWQTLH---TVWMEEG 198
           F+   G      TVA  ++YP +  R R+  +  + +    +  TLH   T++  EG
Sbjct: 212 FLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = -1

Query: 536 LQCIKRIYAKSGIRGFYKGITASYMGISET-VVHFVLYEGVKARLIAARSVDGVASDQRS 360
           + C  RI  + G   +++G  A+ +    T  ++F   +  K   +      GV  + + 
Sbjct: 57  IDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG-----GVDKNTQF 111

Query: 359 PRDFIEFMGAGAFSKTVASCIAYPHEVARTRLREEGDK 246
            R F+  + +G  +   + C  YP + ARTRL  +  K
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149



 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 542 TALQCIKRIYAKSGIRGFYKGITASYMGISETVVHFVLYEGVK 414
           + L C   IY   G   F+KG  ++ +  +   +  VLY+ +K
Sbjct: 255 STLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIK 297


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 446 VVHFVLYEGVKARLIAARSVDGVASDQRSPRDFIEFMG 333
           ++H  L   V   L+ A   D V  D+R+P    E  G
Sbjct: 2   IIHSTLLLMVSITLVIAEESDNVLFDKRAPTGHQEMQG 39


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 446 VVHFVLYEGVKARLIAARSVDGVASDQRSPRDFIEFMG 333
           ++H +    V   L+ A   D V  D+R+P    E  G
Sbjct: 2   IIHSIFLLMVSITLVIAEESDNVLFDKRAPTGHQEMQG 39


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 446 VVHFVLYEGVKARLIAARSVDGVASDQRSPRDFIEFMG 333
           ++H +    V   L+ A   D V  D+R+P    E  G
Sbjct: 2   IIHSIFLLMVSITLVIAEESDNVLFDKRAPTGHQEMQG 39


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 446 VVHFVLYEGVKARLIAARSVDGVASDQRSPRDFIEFMG 333
           ++H +    V   L+ A   D V  D+R+P    E  G
Sbjct: 2   IIHSIFLLMVSITLVIAEESDNVLFDKRAPTGHQEMQG 39


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 548 HVTALQCIKRIYAKSGIRGFYKGITASYMG 459
           +V   +C+K I  KSG+    +G    Y G
Sbjct: 605 NVAGCRCVKGILLKSGLYHVLRGNENIYSG 634


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 316 FEKAPAPMNSMKSRGDLWSLAT 381
           F  A  P  +     DLW+LAT
Sbjct: 22  FYSASYPPQNRSQEEDLWNLAT 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,770
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)