Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G12
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    57   2e-09
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.0  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   9.2  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -2

Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAA 588
           MNNQ+  N+PI+VSYAFK++ KGERHG  AER LAA
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAA 195


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 21   SCFLTVFIMLVSKLKQN--YAKLHYLFQSFSYQHSII 125
            SCFL +F++ VS LKQ    A+   + +S +Y  S++
Sbjct: 1392 SCFLDLFLLEVSDLKQTECNAQSDKIIKSITYWQSLL 1428


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  FYYACVEIKTKLCKITLFISV 100
           F+YA + I+T +C IT+F  +
Sbjct: 129 FFYAFLNIRTLVCGITIFTEI 149


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 39  FIMLVSKLKQNYAKLHYLFQSFSYQHSII 125
           F+ L   +  NY K  YL + FSY++ I+
Sbjct: 826 FLYLDDGVTFNYKKGEYLIRHFSYENGIL 854


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,808
Number of Sequences: 5004
Number of extensions: 20222
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)