Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G12
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 111 3e-24
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b, sub... 111 3e-24
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b, sub... 111 3e-24
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 111 3e-24
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 119 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 178
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 119 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 178
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 111 bits (267), Expect = 3e-24
Identities = 51/60 (85%), Positives = 52/60 (86%)
Frame = -2
Query: 695 MNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQNPLSHADRPHQLFADAPPTLMGP 516
MN QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQNPLS ADRPHQLFADAPP P
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,952,226
Number of Sequences: 237096
Number of extensions: 797241
Number of successful extensions: 1463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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