Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G11
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.2
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 31 1.2
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 31 1.2
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 30 1.7
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 30 2.2
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.9
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 3.8
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 3.8
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.8
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.8
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 3.8
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.0
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 5.0
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 5.0
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 5.0
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 29 5.0
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 6.7
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 28 6.7
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 28 6.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.8
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.8
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 396 SGPAGCSGTPAAPSGRPDGLPCRDG 322
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 393 GPAGCSGTPAAPSG-RPDGLPCRDGRRFRAFDSPRRL 286
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 393 GPAGCSGTPAAPSG-RPDGLPCRDGRRFRAFDSPRRL 286
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 399 GSGPAGCSGTPAAPSGRP--DGLPCRDG 322
G G GC +P P GRP DG P DG
Sbjct: 135 GGGCCGCGQSPPGPPGRPGSDGSPGSDG 162
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 432 STVYRVPTRQAGSGPAGCSGTPAAPSGRPDGLPCRDG 322
S V P G G GC G +P G P G+P RDG
Sbjct: 103 SAVESAPANVGGGG-GGCCGCGVSPQG-PPGVPGRDG 137
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 396 SGPAGCSGTPAAP--SGRPDGLPCRDGRR 316
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 399 GSGPAGCSGTPAAPSGRPDGLPCRDGRRFRAFDSP 295
G GCS PA P P PC G RA+ +P
Sbjct: 21 GGSSCGCSAPPACPPPPPPS-PCGGGGYARAYSAP 54
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 396 SGPAGCSGTPAAP--SGRPDGLPCRDGRR 316
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 396 SGPAGCSGTPAAPSGR-PDGLPCRDGRRFR 310
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 432 STVYRVPTRQAGSGPAGCSGTPAAPSGRPDGLPCRDG 322
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 158 SFGGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 57
S+ GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 158 SFGGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 57
S+ GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 492 LTPSGRPLTFTGGEAATYRGPGRTGALPPPAPGSTA 599
+T +G + T EA T G G G++PPP P +TA
Sbjct: 142 ITTNGEEIMKT--EALTPTGGGGGGSVPPPPPAATA 175
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 619 PFPHRSVAVEPGAGGGSAPVRPGPL*VAASPPVKVKGRP 503
P P RS A+ GAGGG+ P P AA+P + P
Sbjct: 273 PCPPRSAAL--GAGGGAEPAGAAPEAAAAAPEAAPEAAP 309
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 158 SFGGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 57
S+ GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 393 GPAGCSGTPAAPSGRP--DGLPCRDGRR 316
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 589 PGAGGGSAPVRPGPL*VAASPPVKVKGRP 503
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 589 PGAGGGSAPVRPGPL*VAASPPVKVKGRP 503
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 393 GPAGCSGTPAAPSGRP--DGLPCRDGRRFRAFDSP 295
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 121 RGPKDFR----AHPPNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 267
+G KD+ P D + HP PL +P G +PR+ L P+GA P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 65 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 108
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 113 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 156
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 65 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 108
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 113 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 156
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 65 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 108
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 501 SGRPLTFTGGEAATYRGPGRTGALPPPAPGSTATDRCGKGXSSPXSRS 644
SG P +GG +A Y GR+ P GS+++ G S SRS
Sbjct: 113 SGAPAASSGGSSARYSSSGRS----HPTSGSSSSHARSTGQSGMSSRS 156
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 414 PTRQAGSGPAGCSGTPAAPSGRPDGLPCRDGR 319
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 414 PTRQAGSGPAGCSGTPAAPSGRPDGLPCRDGR 319
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,882
Number of Sequences: 27780
Number of extensions: 299027
Number of successful extensions: 1544
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -