Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G09
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 1.00
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 3.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.0
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 4.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 7.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.3
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 9.3
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 1.00
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 434 ERPVDSVSRPVPAGWFWSSGVFRDTSGTVW 345
+R +D+ +P P +F G RD G +W
Sbjct: 492 DRYIDTYLKPYPGFYFTGDGATRDKDGYIW 521
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 290 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 412
R +E S S PVGPP W P T+TSL + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 267 PSRRSLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPACR 401
P + + R SK L+ GSPS A P PEPA +
Sbjct: 874 PKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 428 PVDSVSRPVPAGWFWSSGVFRDTSGTV 348
P+ S+S+ VP GW W F T+G +
Sbjct: 293 PIASLSKIVPKGWQWCLSYFA-TAGVI 318
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 5.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 165 YTRRPIPSEVRTRMR*GGYR---GQHYNQRARLTPRTPSRRSLRGES-----KALKRRPS 320
+ ++P PS ++ GG R G+ + RL R+PS R S ++ +R S
Sbjct: 83 WAKQPPPSGPGSKR--GGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMS 140
Query: 321 -QYGSPSGRPDGAAGVPEY 374
+Y S S PDG + P+Y
Sbjct: 141 PRYRSRSRSPDGRSRSPDY 159
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 147 TTPLHSYTRRPIPSEVRTRMR*GGYRGQHYNQRARLTPRTPSR--RSLRGESKALKRRPS 320
T+ HS+ P P R R ++Y RLTP S R R ++ +R S
Sbjct: 38 TSSTHSHPSNPPPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMGYRYARSSKQSFQREDS 97
Query: 321 QY 326
Y
Sbjct: 98 GY 99
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 282 LRGESKALKRRPSQYGSPSGRPDGAA 359
L S + R+P QY SPSG + AA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 9.3
Identities = 22/82 (26%), Positives = 30/82 (36%)
Frame = +3
Query: 324 YGSPSGRPDGAAGVPEYPAGPEPACRDGTRYTVNRSLYSLHGSALECW*RAARPHPLRSP 503
YG+P AG GPE + + +N +Y GSA+ R AR H
Sbjct: 10 YGNPETYRQNVAGNIASYGGPEIDTQLAAQ--MNAQMYIQQGSAMAPQPRRARRHKDAHA 67
Query: 504 LDLHRGGARYLQGPGRTGVFPP 569
D+ A P + PP
Sbjct: 68 YDMSLTDAEPALAPVMSPAIPP 89
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 594 PSPSSRGPEAGIRPYVPAPV 535
P+ + RG E + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,312
Number of Sequences: 5004
Number of extensions: 52630
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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