Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G09
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 406  PSRQAGSGPAGYSG 365
            PSRQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 453 RCRGVNRATG*QCIASRPGRLVLVQ 379
           +CR  +R TG   +++  GRLV+ +
Sbjct: 180 QCRTKHRLTGETRLSATKGRLVITE 204


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 404 VPAGWFWSSGVFRDTSGTV 348
           VPAGW W    F    G V
Sbjct: 161 VPAGWIWGDQGFLKKLGAV 179


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 459 ECW*RAARPHPLRSPLDLHRGGARY 533
           EC  R  R H L++ + LH G   Y
Sbjct: 14  ECHKRFTRDHHLKTHMRLHTGEKPY 38


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 388 SGPAGYSGTPAAPSGRPDGLPY 323
           S P G+      P G+ +G+PY
Sbjct: 593 SQPYGFPERLLLPKGKKEGMPY 614


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 388 SGPAGYSGTPAAPSGRPDGLPY 323
           S P G+      P G+ +G+PY
Sbjct: 593 SQPYGFPERLLLPKGKKEGMPY 614


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 329 QPVGPPRRCRWCP 367
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 96  WCCEQTAGP 122
           WCC+   GP
Sbjct: 14  WCCDNLGGP 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,577
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)