Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G08
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230...    29   5.6  

>06_03_0611 -
           22721977-22722276,22722765-22722853,22722978-22723083,
           22723178-22723306,22723803-22723887,22723994-22724103,
           22724424-22724624,22725033-22725394,22725612-22725695,
           22725791-22725916,22725999-22726161,22726378-22726536,
           22727147-22727274,22727371-22727493,22727755-22727899,
           22727992-22728068,22728318-22728696,22729325-22729411
          Length = 950

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 74  NTIMYSLKFRCGCKCM 27
           N+++   KFRCGCKC+
Sbjct: 58  NSVLDKPKFRCGCKCV 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,968
Number of Sequences: 37544
Number of extensions: 218741
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)