Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G06
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 30 2.1
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 30 2.1
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 2.8
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 2.8
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 29 5.0
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 5.0
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 6.6
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 6.6
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 461 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFFPAETC 634
P+ ++CQ+ S+ T TCIR N+ ++ + + R S+ LQ+C TC
Sbjct: 90 PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149
Query: 635 LLSCLLAC 658
SC AC
Sbjct: 150 SNSCSNAC 157
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 199 PILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCVPELQC 80
P +P + C+C + C+ A P + VP QC
Sbjct: 45 PYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 464 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
Score = 23.8 bits (49), Expect(2) = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 314 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 412
S L + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 307 AEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 438
A + P+ T S + PP TA + + NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 386 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,686
Number of Sequences: 27780
Number of extensions: 404563
Number of successful extensions: 1315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -