Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G04
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 30 0.33
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 30 0.43
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.76
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.76
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 27 2.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 27 2.3
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 4.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 5.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 9.4
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 9.4
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 332 YHLEQFLKALPMEHTVQNTEGTEVPPQTQRLQTI 433
Y LEQ LK P+EH + TE + PP+ R++T+
Sbjct: 86 YGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 268 PGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDPRE 441
P S YS N M VS++ +P +Y T G R P + + + PRE
Sbjct: 331 PVSSQRKYSASSYSAIPNAMSVSNQAFDVESPPSSYATPLTGIRMPQPESDLYSYPRE 388
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 407 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 505
P + RLQ +R G+ PNG P Y ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 436 REWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPCEAGLVLYKAKV 576
R W + +SE PS + S + W D T C+ + K K+
Sbjct: 322 RSWFFNRSEIPSDITSGSPQPAKWSEPVADFPDTKCDIDKMFSKQKI 368
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 346 IPQSTPHGTYGTKY-RGNRSPSADPEAPNDPREWDYRQSERP 468
I + P G YG++ R R +D + RE YR+ ERP
Sbjct: 35 IGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDERP 76
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 205 IAGWYVAKKISGNV-LWMTAVAPGSMDELYSGGGRCDG 315
I +Y A + G+V + M + GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 333 YQHLVFTIAPPATGVEFIHTTWSHCGHPQYVSR 235
Y LVFT GV I + W + P Y++R
Sbjct: 684 YHELVFTTKSYVRGVSSIRSNWLNAVAPHYLAR 716
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 238 GNVLWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADP 417
GNV + + SMD + + D + ++SS+T + P+GT T + ++ P D
Sbjct: 523 GNVACLPKESDLSMDSITEVSAQADENSSQILSSKT--SNAPNGTTETDFE-DKVPLVDY 579
Query: 418 EAP 426
+P
Sbjct: 580 ISP 582
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = +1
Query: 382 KYRGNRSP-----SADPEAPNDPREW 444
KYRG RS AD PN+PREW
Sbjct: 492 KYRGLRSLYTSQWDADEYDPNEPREW 517
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -1
Query: 732 SIPATXPRVSGYLGSTFRAMSSLGVIWKAKPSWRPKCWESSTEQSGTSRL 583
S+ T P VSG GST ++ SL V S + E TE S T L
Sbjct: 149 SLSTTQPSVSGGNGSTSQSPPSLDVEQNKPFSISNEPVEQETENSSTKDL 198
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 234 LWKRTVDDRSGSR*YG*TLLRWRAVRW 314
+WK V+DRSG + G T W+ W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +3
Query: 330 GIISNNSSKHSPWNIRYKIQREPKSLRRPRGSKRSERMGLSTIRTALLCMESNGRSWYLG 509
GI S+ H +QR+ K R+P S +R T + L + N R L
Sbjct: 178 GITLERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLTRTGQK--LGTDMNIRLELLK 235
Query: 510 APAQRWEQYSMRGR 551
+PA+ Q SMRGR
Sbjct: 236 SPAKPQAQ-SMRGR 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,927,707
Number of Sequences: 5004
Number of extensions: 94560
Number of successful extensions: 305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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