Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_G04
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 33 0.20
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 31 1.4
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 30 2.4
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 3.2
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 29 4.2
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 29 4.2
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 29 4.2
10_01_0144 - 1705429-1706250 29 5.6
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 29 5.6
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 28 7.4
06_03_1242 - 28618752-28618980,28619457-28619797 28 9.7
04_04_0773 - 27974909-27977191 28 9.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.7
01_06_1100 + 34530132-34530485,34530544-34530705 28 9.7
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 313 GKNEMLVSSRTIPQSTPHGTYG-TKYRGNRSPSADPEAPNDPREWD 447
G+ E V +T Q+ PH YG T R R+ + P A N+ + WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 388 RGNRSPSADPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPCE 546
RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 312 RGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 447 IPFSRIVWSLWVCGGTSVPSVFCTVCSMGSALRNC 343
+PF + LW+CGG + +C+ S + +R+C
Sbjct: 1 MPFHMLASLLWLCGGI---AAYCSAASAATCVRSC 32
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 303 PATGVEFIHTTWSHCGHPQYVSRDLFCHVPSGYGMSSPPRCFPS-ARTCPSSNEAC 139
P V+++ H YVS P + S+PP FPS A + S +AC
Sbjct: 677 PGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPSSTPPSTFPSYASSDQQSQQAC 732
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 394 NRSPSADPEAPNDPREWDYRQSERPSSVWSQMEEA 498
NRS S DP++ +PRE D R+ + V + +A
Sbjct: 659 NRSTSKDPQSVIEPRESDVREGSIENDVCASQSQA 693
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 646 KAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRMEYCSHLWAGAPKYQLLPF 485
++KLA+ +LG ++ + PG R+L + + S + +P+Y +LPF
Sbjct: 127 RSKLAAAVLGGVDNI--WIAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAILPF 178
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 292 SGGGRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDPREWDYRQS--ER 465
S G ++ + + P P T G G +P+A P +P + +
Sbjct: 35 SAAGDAGSDSDAALDPQLPPLRLPASTSG----GGGAPAAPPASPGSSSDSASSSAFVSM 90
Query: 466 PSSVWSQMEEAGIWEPRPRDGSSTPCEAG 552
SS + G+W PR D SS+ E G
Sbjct: 91 RSSPSGMLNPYGVWSPRHSDTSSSEMEFG 119
>10_01_0144 - 1705429-1706250
Length = 273
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 278 WMNSTPVAGGAMVKTRCWYHLEQFLKALP 364
W+ +TP+A CWY L L+ +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 716 FREYRDTWGPHFERCPVSESFGRQSQVGVQN 624
FRE RDT+GP R P + +G Q+Q +QN
Sbjct: 42 FREERDTFGP--IRVPNDKLWGAQTQRSLQN 70
>09_04_0175 -
15353903-15354005,15354189-15354280,15354408-15354553,
15354661-15354814,15354885-15354985,15355055-15355145,
15355146-15355378,15355501-15355736,15355839-15356066,
15356150-15356370,15356869-15356990,15357125-15357451,
15357616-15357754,15357822-15357901,15358478-15358678,
15359431-15359757,15360144-15360897
Length = 1184
Score = 28.3 bits (60), Expect = 7.4
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Frame = -2
Query: 662 ESFG-RQSQVGVQNAGSPQQSKAVLHAWTKTFAL*STSPASHGVLLPS-----LGRGSQI 501
E FG +S + A + A L +WT + A + S AS V L + RG+ +
Sbjct: 123 ERFGVAESTLEFAVAAAGVHPSASLASWTYSGACVAGSKASVSVALRDAFGNGVARGADM 182
Query: 500 PASSI*LHTEEGRSDCR*SHSLGSFGASGSAEGLRFPLYFVPYVPWGVL*GIVRDDTSI 324
P + L RS+ F +G AE R L FVP V L + DD ++
Sbjct: 183 PGGNGNLKVSVSRSNGA-IVEFKDFRYNGWAEDGRISLEFVPVVAGAFLVRVQSDDNTL 240
>06_03_1242 - 28618752-28618980,28619457-28619797
Length = 189
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = +2
Query: 407 PQTQRLQTIRENGIIDNPNGPPL-------YGVKWKKLVFGSPGPEM 526
P R+ R N I+ P PPL YG W F +PGP +
Sbjct: 105 PSGPRINNSRTNIYINPPVAPPLVGGYGYGYGYGWSPFSFFAPGPSV 151
>04_04_0773 - 27974909-27977191
Length = 760
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 401 VPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFGSPGPEMGAVL 538
VP QT LQT + PP G +W G G G ++
Sbjct: 97 VPDQTHTLQTTHTPQFLGLSAPPPPQGKRWSSSSHGGSGAGAGVIV 142
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 115 RLGSAPWHC*SPWATGNHSPS--GGPYARLPTKAIKK 11
R+GS P P A GN P+ GGP R P A+ +
Sbjct: 886 RMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPR 922
>01_06_1100 + 34530132-34530485,34530544-34530705
Length = 171
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 307 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 179
+A+H H L+ L+ T + + + + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,914,887
Number of Sequences: 37544
Number of extensions: 735054
Number of successful extensions: 2201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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