Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_G03
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.29 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.29 

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 30/114 (26%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
 Frame = +2

Query: 368 PSPXSTPXAXXALPRPCXPPXXXXRXPAPPXXPXLXXXPLXXPNXXXXXTPAXXXXGPXX 547
           P P   P      PRP  PP      P PP  P     P   P       P+    GP  
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS--RFGPPG 329

Query: 548 XGSIWXSGP----XPGAXRSP----YPLXXXVXLXSXPRXXXDXPXSXXGXXPP 685
            G +    P     PG    P    YP          P      P S  G  PP
Sbjct: 330 MGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 30/114 (26%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
 Frame = +2

Query: 368 PSPXSTPXAXXALPRPCXPPXXXXRXPAPPXXPXLXXXPLXXPNXXXXXTPAXXXXGPXX 547
           P P   P      PRP  PP      P PP  P     P   P       P+    GP  
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS--RFGPPG 339

Query: 548 XGSIWXSGP----XPGAXRSP----YPLXXXVXLXSXPRXXXDXPXSXXGXXPP 685
            G +    P     PG    P    YP          P      P S  G  PP
Sbjct: 340 MGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,171
Number of Sequences: 27780
Number of extensions: 143780
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)