Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_F21
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   199   3e-52
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   198   8e-52
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  199 bits (486), Expect = 3e-52
 Identities = 97/147 (65%), Positives = 108/147 (73%)
 Frame = -3

Query: 795 AXRAXVXIEXPXDXXVISSRPFGQRAVXKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPR 616
           A R    IE P D  VISSRP+G RAV KFAAHTG T IAGRFTPG FTN I   +REPR
Sbjct: 64  AARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 123

Query: 615 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 436
           L+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAR
Sbjct: 124 LIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAR 183

Query: 435 EVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           EVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 184 EVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  198 bits (483), Expect = 8e-52
 Identities = 95/147 (64%), Positives = 108/147 (73%)
 Frame = -3

Query: 795 AXRAXVXIEXPXDXXVISSRPFGQRAVXKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPR 616
           A R    IE P D  V+S+R +G RAV KFAAHTG T IAGRFTPG FTN I   +REPR
Sbjct: 63  AARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122

Query: 615 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 436
           L++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAR
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAR 182

Query: 435 EVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           EVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 183 EVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 419 VVCFPVTSAGMLWLICSSTVTPEESEKD 336
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 571 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRXTGVRGKLXYSTLTEGP 738
           S GL  L R +   E  F +     +S + W  T +     G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,954
Number of Sequences: 5004
Number of extensions: 56557
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)