Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_F17
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical...    28   8.7  
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical...    28   8.7  

>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 50  RSQHDAALPSTTPRQERKSSTDYSEPRRRTELYPDLRSRDARVKKKTDSIDLRDPNGLRR 229
           R +HD+   ++ PR   +  +D S PRRR    P  R +D  +     S  + +P  +++
Sbjct: 185 RDRHDS--DNSPPRNRSRRDSDNSPPRRRPS-SPARRRKDDDLSPPRKSRKIEEPKKIKK 241

Query: 230 RVSRFECET 256
                + ET
Sbjct: 242 EEPDSDTET 250


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 432 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 253
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 252 SH--SKRETRRRSP 217
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24b protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETRRRSPFGSRRSMLSVFFLTR 172
           A  +++  D L++ PR  G  K  DF+   SR  +      + SP  S  S++S+  LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167

Query: 171 ASRLRRSGYNSVRRRGS 121
                 SGY   +R  S
Sbjct: 168 TLSKATSGYRKKKRECS 184


>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24a protein.
          Length = 1161

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETRRRSPFGSRRSMLSVFFLTR 172
           A  +++  D L++ PR  G  K  DF+   SR  +      + SP  S  S++S+  LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167

Query: 171 ASRLRRSGYNSVRRRGS 121
                 SGY   +R  S
Sbjct: 168 TLSKATSGYRKKKRECS 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,294,168
Number of Sequences: 27780
Number of extensions: 385046
Number of successful extensions: 1155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)