Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F16
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.2
03_05_0183 - 21681673-21682524 29 4.2
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.5
01_06_0695 - 31292622-31293317 28 7.3
12_02_1248 - 27330177-27330740 28 9.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.7
01_01_1014 - 8022787-8023935 28 9.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 69 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 197
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 337 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 203
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 195 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 344
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 424 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 326
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 636 SQAFIATLLFDPSMSALPIIAKQNSPS 556
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -2
Query: 484 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 320
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 319 GKDMLTVEPRESGGSK 272
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 21 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 155
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>12_02_1248 - 27330177-27330740
Length = 187
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 126 VGARNSL*TTSVPGGVLCSVEQRRAAIC*DSA-LRQVKKKKKK 1
+ AR + VPG + C +E+R A+ + A + KKK+KK
Sbjct: 60 IAARPLWVSRDVPGAMECWIEEREKALAEEEADIASGKKKRKK 102
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 346 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 173
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 172 TRASR 158
TRA+R
Sbjct: 64 TRAAR 68
>01_01_1014 - 8022787-8023935
Length = 382
Score = 27.9 bits (59), Expect = 9.7
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Frame = +3
Query: 9 FFFSPGAGLSLNRSQHDAALPSTTPRQ---ERKSSTDY-----SEPRHRTELYPDLRSRD 164
F F PG L LN A T PR+ +RK+ +Y ++ RH L + D
Sbjct: 37 FHFPPGTELRLNFGAPPFASRITVPRRIAPDRKAIDNYPYLAAADERHGRLLLYATQGPD 96
Query: 165 ARVKKKTDSIDLRDPNGLRRRVSR--FECETRLVKSHCLEPPD 287
+ D+ LR P G+ ++ F C+T ++ L PD
Sbjct: 97 PEPRPALDAFYLR-PLGVHHGFAKAYFICDTTTREASRLPDPD 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,493,555
Number of Sequences: 37544
Number of extensions: 491551
Number of successful extensions: 1424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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