Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_F14
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 390 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 211
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 210 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  128 bits (309), Expect = 9e-31
 Identities = 61/119 (51%), Positives = 78/119 (65%)
 Frame = -1

Query: 769 RAHIMXIQXNXGTIEXXSEMGQRTFWRNXIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 590
           +AH+M IQ N G++    E  +  F +  + + S F Q+EMID I           T+RW
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKT-VDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233

Query: 589 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 413
            TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 234 GTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 390 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 211
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 210 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score =  128 bits (309), Expect = 9e-31
 Identities = 61/119 (51%), Positives = 78/119 (65%)
 Frame = -1

Query: 769 RAHIMXIQXNXGTIEXXSEMGQRTFWRNXIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 590
           +AH+M IQ N G++    E  +  F +  + + S F Q+EMID I           T+RW
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKT-VDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233

Query: 589 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 413
            TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 234 GTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 494 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 348
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 470 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 330
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 377 SVDALFLITLPSFLWIPW 430
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,355
Number of Sequences: 5004
Number of extensions: 67485
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)