Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_F11
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   5.0  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   5.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.6  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.6  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    28   8.8  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   8.8  
AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 671 SKMSLRNK---VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 531
           +K S  NK   + LYKT IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 647 VTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 531
           + LYKT IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 510  PRGSDGYPAKTGLNNLKG 563
            PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 510  PRGSDGYPAKTGLNNLKG 563
            PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 510  PRGSDGYPAKTGLNNLKG 563
            PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 488  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 488  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 501 PDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEH 596
           P+ PRG  G P +TG +  +G     GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 365 PADRMESSRRRPKHVISDPPDP 300
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical
           protein Y104H12D.3 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSC 416
           +R++  ++ + T   FH  +    VV GG  E ++++C
Sbjct: 176 VRKMEAEILKMTCAMFHGGKDSCGVVAGGGTEALMLAC 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,316
Number of Sequences: 27780
Number of extensions: 324576
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)