Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_F09
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    29   2.9  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    29   2.9  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    29   2.9  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    29   5.1  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    29   5.1  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -3

Query: 335  ARICSLWSPESREALNNVTLLVAFRIQNARPDVEAHLDRGDRCYRFFS*HVHHG------ 174
            A++  +W  E   A   +  LV      A+PDVEA L +GDR +  ++     G      
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1346

Query: 173  SEGPDITQFDV 141
             EGPD  Q  +
Sbjct: 1347 QEGPDGQQHPI 1357


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -3

Query: 335  ARICSLWSPESREALNNVTLLVAFRIQNARPDVEAHLDRGDRCYRFFS*HVHHG------ 174
            A++  +W  E   A   +  LV      A+PDVEA L +GDR +  ++     G      
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1249

Query: 173  SEGPDITQFDV 141
             EGPD  Q  +
Sbjct: 1250 QEGPDGQQHPI 1260


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -3

Query: 335  ARICSLWSPESREALNNVTLLVAFRIQNARPDVEAHLDRGDRCYRFFS*HVHHG------ 174
            A++  +W  E   A   +  LV      A+PDVEA L +GDR +  ++     G      
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1260

Query: 173  SEGPDITQFDV 141
             EGPD  Q  +
Sbjct: 1261 QEGPDGQQHPI 1271


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 444 FGHLVHAPGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 265
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 264 SH--SKRETRRRSP 229
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 332 LPDSARLASALEAFRHNPADGSFAPPAARPGA*TKCPKLRFLS 460
           LPD + ++S+L    HNP   +++ P       TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,411
Number of Sequences: 27780
Number of extensions: 395768
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)