Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F06
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 32 0.11
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 0.57
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.0
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.0
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 3.1
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.0
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 9.3
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.3
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.9 bits (69), Expect = 0.11
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = -1
Query: 677 QPDHQ-IPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMXK 504
QP HQ FHTPT P T +S +P + + PLS +A S LT S L +
Sbjct: 130 QPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQ 187
Query: 503 GVSPPYFQVNDESQASR--LISRHSPYSAPLLQLTPSSKTSSW 381
SPP V +S + L+ + P Q +P +KT S+
Sbjct: 188 S-SPPLSTVLQKSHSLHDILLDTNDDDHFPFTQ-SPLTKTKSF 228
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 724 SPLCIKPPXPCDXGYINPIIKSPD-SIHQPPQT*HPFPS 611
+PL PP P D + NP++ PD + QP +T + P+
Sbjct: 212 APLSGPPPQPGDIVFSNPMLGGPDHKVSQPSETENFLPT 250
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 228
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 255 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 160
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 354 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 175
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 174 LSASIQASLPSSEIYRQL 121
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 617 SINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRH 438
S+NP TP +P + PP+S+ +P P S ++P + +N+ S+ S
Sbjct: 271 SLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS--SDGHLAPAFDFLNENPIWSKRFSIS 328
Query: 437 S-PYSAP 420
S YSAP
Sbjct: 329 SIKYSAP 335
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = -1
Query: 647 TPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDE 468
T +T TS SI P P + PP S+ + S P+S S P +
Sbjct: 280 TTSTSCTTSTSIPPTGNSTTPVTPTV-PPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338
Query: 467 SQASRLISRHSPYSAPLLQLTPSSKTSS 384
S I + P+ P + TSS
Sbjct: 339 CTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Score = 21.0 bits (42), Expect(2) = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 281 PESTSSIPLATFQLLPSIPYCTTTS 207
P STSS ++ LL + CTT++
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCTTST 397
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 330 LVTHKELALKVSSIIGTRVYVFDPSCY 250
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 9.3
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -3
Query: 438 FPILRSPPPTHPLIEDVVMA-ANQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFD 262
FPIL S P PL+ D A + + D+KV++ N ++ ELAL + ++ R D
Sbjct: 813 FPIL-SMAPDRPLLADEDFANISLKVSDHKVELVKN--LSLLELALLICAV---RFEARD 866
Query: 261 -PSCYFST 241
P+C F++
Sbjct: 867 IPACNFNS 874
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -1
Query: 668 HQIPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSAYL 531
H P P+TP + SI+P TP Y + A L PLS + +AYL
Sbjct: 295 HCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYL 345
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 115 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 216
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,956
Number of Sequences: 5004
Number of extensions: 56234
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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