Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F05
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.027
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.44
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 4.1
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 5.4
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 9.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.4
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.4
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 33.9 bits (74), Expect = 0.027
Identities = 32/127 (25%), Positives = 54/127 (42%)
Frame = +3
Query: 162 TLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARR 341
T+TP+ P S + + + N +RR G+ + R + +N+R N R A+R
Sbjct: 149 TITPNFTHTPISNR---KSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRS 205
Query: 342 AAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTG 521
+ P D N GS + + G+ T+ S+ APH + SG + G
Sbjct: 206 IDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTSED-SSSQAPHHSSSSGHAPSQQG 262
Query: 522 GEAATYR 542
G +Y+
Sbjct: 263 GNKHSYK 269
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 619 AXPFPHRSVAVEPGAGGGNTPVRPGPL*VAASPPVKV-KGRPEGVRPCGALP 467
A P P SVAV P P P P A+PPV V G P +P A P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKP--SVAAPPVPVPSGAPPVPKPSVAAP 1150
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -2
Query: 619 AXPFPHRSVAVEPGAGGGNTPVRPGPL*VAASPPVKVKGRPEGVRPCGALP 467
A P P SVA P P P P A P G P +P +P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSG---RPLTFTGGEAATYRG 545
A S R TP+ RS STA R + G +G P T + ++ + RG
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRG 193
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +3
Query: 387 QNQPAGSGRDTPST----GRSNHSTAAR*SAGS--APHGLTPSGRPLTFTGGEAATYRGP 548
Q A G TP+ G +N++T++ +G + + + P TF+ G+AAT
Sbjct: 20 QPNSAAQGAATPAATGLFGNTNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNS 79
Query: 549 GRTGVFPPPAPGSTATD 599
P + GST T+
Sbjct: 80 TNASTSSPFSFGSTNTN 96
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSA-PHGLTPSGRPLTFTGGEAAT 536
+G GR P N + SA +A P+GL P PLT + T
Sbjct: 862 SGMGRAAPGMFMGNVGSFENLSANAASPYGLPPQQTPLTNAATQQTT 908
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 292
STV +P+ + ++ + S RPD LP G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +3
Query: 471 SAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPAPGST 590
S H PSG P +++ A + P PAP ++
Sbjct: 52 SVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAAS 91
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 348 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 449
QT P++ N P+ N PA + +TP+ + T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 363 VSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAAT 536
VS +TPL S T +T S S++A+ + S TPS PL+ AT
Sbjct: 249 VSSSTPL-----TSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT 301
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 393 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 310
G P TP APS G P+ +G++
Sbjct: 95 GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,974
Number of Sequences: 5004
Number of extensions: 52534
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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