Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F05
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.10
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.10
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.10
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical... 30 1.7
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.2
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.2
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 30 2.2
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 30 2.2
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 30 2.2
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 30 2.2
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 2.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.9
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41533-10|AAA83172.1| 491|Caenorhabditis elegans Hypothetical p... 29 2.9
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.9
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.8
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 3.8
U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical pr... 29 3.8
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 3.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.8
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 29 5.1
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.1
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 5.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 5.1
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 6.7
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 6.7
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.9
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 8.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 8.9
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.10
Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Frame = +3
Query: 162 TLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGT 329
T +P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 346 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPR 405
Query: 330 AARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHGLTPSG 500
RR+ T + + P + +P TG R GS P G P+G
Sbjct: 406 GPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTG 465
Query: 501 RPLTFTGGEAATYRGPGRTGVFPP---PAPGSTAT 596
RP GG + R G P P GS T
Sbjct: 466 RP--HRGGPGKSESSESREGPRGPRRSPPTGSPPT 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPP 575
PAG+G P + + GS P G P+GRP G+++ R G P
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 382
Query: 576 APG 584
G
Sbjct: 383 RGG 385
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.10
Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Frame = +3
Query: 162 TLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGT 329
T +P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 367 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPR 426
Query: 330 AARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHGLTPSG 500
RR+ T + + P + +P TG R GS P G P+G
Sbjct: 427 GPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTG 486
Query: 501 RPLTFTGGEAATYRGPGRTGVFPP---PAPGSTAT 596
RP GG + R G P P GS T
Sbjct: 487 RP--HRGGPGKSESSESREGPRGPRRSPPTGSPPT 519
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPP 575
PAG+G P + + GS P G P+GRP G+++ R G P
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 403
Query: 576 APG 584
G
Sbjct: 404 RGG 406
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.10
Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Frame = +3
Query: 162 TLTPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGT 329
T +P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 352 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPR 411
Query: 330 AARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTG---RSNHSTAAR*SAGSAPHGLTPSG 500
RR+ T + + P + +P TG R GS P G P+G
Sbjct: 412 GPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTG 471
Query: 501 RPLTFTGGEAATYRGPGRTGVFPP---PAPGSTAT 596
RP GG + R G P P GS T
Sbjct: 472 RP--HRGGPGKSESSESREGPRGPRRSPPTGSPPT 504
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPP 575
PAG+G P + + GS P G P+GRP G+++ R G P
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 388
Query: 576 APG 584
G
Sbjct: 389 RGG 391
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 390 SGPAGYSGTPAAPSGRPDGLPYRDG 316
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 157 SALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQ- 333
S L S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 46 STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105
Query: 334 PVGPPRRCRWCPGIP 378
PV P G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120
>AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical
protein Y25C1A.3 protein.
Length = 605
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/70 (37%), Positives = 27/70 (38%)
Frame = +3
Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPA 578
AG T + G S STAA S S G T GG AT G T A
Sbjct: 228 AGGSTATTAAGGSTASTAAGGSTASTAAG---GSTATTAAGGSTATTAAGGSTA--STAA 282
Query: 579 PGSTATDRCG 608
GSTAT G
Sbjct: 283 GGSTATTAAG 292
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/70 (35%), Positives = 27/70 (38%)
Frame = +3
Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPA 578
AG T + G S STAA S S G T GG AT G T A
Sbjct: 192 AGGSTATTAAGGSTASTAAGGSTASTAAG---GSTATTAAGGSTATTAAGGSTA--STAA 246
Query: 579 PGSTATDRCG 608
GSTA+ G
Sbjct: 247 GGSTASTAAG 256
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/70 (35%), Positives = 27/70 (38%)
Frame = +3
Query: 399 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPA 578
AG T + G S STAA S S G T GG AT G T A
Sbjct: 282 AGGSTATTAAGGSTASTAAGGSTASTAAG---GSTATTAAGGSTATTAAGGSTA--STAA 336
Query: 579 PGSTATDRCG 608
GSTA+ G
Sbjct: 337 GGSTASTAAG 346
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 390 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 310
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 411 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 411 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 411 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 316
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/59 (38%), Positives = 28/59 (47%)
Frame = +3
Query: 402 GSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPA 578
GSG PS S+ S A + GSA S PL+F G A + GP +G F PA
Sbjct: 638 GSGH-VPSDFGSSPSDLAPAAPGSASSQPGLSDGPLSFGSGNAPSEFGPVPSGSFGSPA 695
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 152 SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 51
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +3
Query: 345 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGG 524
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 675 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 730
Query: 525 EAATYRGPGRTGVFPPPAPGSTA 593
+ AT T P S+A
Sbjct: 731 QPATQPATTPTTTIPTTTQFSSA 753
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +3
Query: 345 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGG 524
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 731 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 786
Query: 525 EAATYRGPGRTGVFPPPAPGSTA 593
+ AT T P S+A
Sbjct: 787 QPATQPATTPTTTIPTTTQFSSA 809
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +3
Query: 345 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGG 524
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 554 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 609
Query: 525 EAATYRGPGRTGVFPPPAPGSTA 593
+ AT T P S+A
Sbjct: 610 QPATQPATTPTTTIPTTTQFSSA 632
>U41533-10|AAA83172.1| 491|Caenorhabditis elegans Hypothetical
protein R05F9.1a protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +3
Query: 351 TVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPH-GLTPSGRPLTFTGGE 527
+VP S + Q P+ S ST R + R SA S+ H +PS P G
Sbjct: 15 SVPAYSATSSSSQAGPSAS----TSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCS 70
Query: 528 AATYRGPGRTGVFPPPAP 581
++ P R+ PP AP
Sbjct: 71 SSGESNPDRSLTTPPLAP 88
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 390 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 310
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 390 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 304
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 316
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 324 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTA 452
GT A + + ++ TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +3
Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
TA ++ TVP S P Q+ +G TPS S + + + S P G +T
Sbjct: 374 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 433
Query: 492 PSGRPLTF-TGGEAATY 539
P G + TG +T+
Sbjct: 434 PEGSTASSPTGSTGSTF 450
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +3
Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
TA ++ TVP S P Q+ +G TPS S + + + S P G +T
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 640
Query: 492 PSGRPLTF-TGGEAATY 539
P G + TG +T+
Sbjct: 641 PEGSTASSPTGSTGSTF 657
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +3
Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHG-----LT 491
TA ++ TVP S P Q+ +G TPS S + + + S P G +T
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTIT 640
Query: 492 PSGRPLTF-TGGEAATY 539
P G + TG +T+
Sbjct: 641 PEGSTASSPTGSTGSTF 657
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 387 GPAGYSGTPAAPSG-RPDGLPYRDG 316
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical
protein R05F9.1b protein.
Length = 588
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 354 VPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPH-GLTPSGRPLTFTGGEA 530
VP S + Q P+ S ST R + R SA S+ H +PS P G +
Sbjct: 113 VPAYSATSSSSQAGPSAS----TSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSS 168
Query: 531 ATYRGPGRTGVFPPPAP 581
+ P R+ PP AP
Sbjct: 169 SGESNPDRSLTTPPLAP 185
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 387 GPAGYSGTPAAPSG-RPDGLPYRDG 316
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 387 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 295
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = +3
Query: 405 SGRDTPSTGRSNHSTAAR*SAGSAPHGLT---PSG--RPLTFTGGEAATYRG-PGRTGVF 566
S R +TG + T A SAP LT P+G RP T A P R V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 567 PPPAPGSTATDR 602
AP S A R
Sbjct: 302 TKTAPASKAPTR 313
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = +3
Query: 405 SGRDTPSTGRSNHSTAAR*SAGSAPHGLT---PSG--RPLTFTGGEAATYRG-PGRTGVF 566
S R +TG + T A SAP LT P+G RP T A P R V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 567 PPPAPGSTATDR 602
AP S A R
Sbjct: 302 TKTAPASKAPTR 313
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = +3
Query: 405 SGRDTPSTGRSNHSTAAR*SAGSAPHGLT---PSG--RPLTFTGGEAATYRG-PGRTGVF 566
S R +TG + T A SAP LT P+G RP T A P R V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 567 PPPAPGSTATDR 602
AP S A R
Sbjct: 302 TKTAPASKAPTR 313
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 387 GPAGYSGTPAAPSGRP--DGLPYRDGRR 310
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +3
Query: 396 PAGSGRDTPS-TGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPP 572
P G+G TP TG + ++ P +G P GE G G PP
Sbjct: 224 PKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPP 283
Query: 573 PAPGSTAT 596
P P T T
Sbjct: 284 PPPKGTGT 291
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 387 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 289
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/85 (28%), Positives = 31/85 (36%)
Frame = +3
Query: 327 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 506
T A R VP VS L PAG R T + + + A +AP P+ +
Sbjct: 307 TGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKA 366
Query: 507 LTFTGGEAATYRGPGRTGVFPPPAP 581
T A + P R P AP
Sbjct: 367 PTRAPIPARSAPAPPRGA--PAKAP 389
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 468 GSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVFPPPAPG 584
G+ P G G P +F G A GPG G F P APG
Sbjct: 283 GAFPPGQGGPGMPGSFPPG-APGPGGPGMPGSFAPGAPG 320
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +3
Query: 396 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGRTGVF-PP 572
P GS TP T + + + + P G T P TGG T G TGV
Sbjct: 526 PVGSSGMTPPTPVTGGTGPTETTGVTMPLGSTWMTTPTPVTGGTGGTMGPMGSTGVTQAS 585
Query: 573 PAPGST 590
P G+T
Sbjct: 586 PVTGAT 591
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -2
Query: 613 PFPHRSVAVEPGAGGGNTPVRPGPL*VAASPPVKVKGRPE------GVRPCGA 473
P P RS A+ GAGGG P P AA+P + P G P GA
Sbjct: 273 PCPPRSAAL--GAGGGAEPAGAAPEAAAAAPEAAPEAAPAAEGAGGGAEPAGA 323
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 518 RGGGRHLQGAGTYGRIPASGPRLDGDGSVRKG 613
RGGG +G G YGR A + G G+ R G
Sbjct: 372 RGGGTVTRGTGGYGRTGAIRGGVRGSGAPRYG 403
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 518 RGGGRHLQGAGTYGRIPASGPRLDGDGSVRKG 613
RGGG +G G YGR A + G G+ R G
Sbjct: 372 RGGGTVTRGTGGYGRTGAIRGGVRGSGAPRYG 403
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 313
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +1
Query: 172 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSKTS 315
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 316 AVSVRQPVGPP 348
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 583 PGAGGGNTPVRPGPL*VAASPPVKVKGRP 497
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 583 PGAGGGNTPVRPGPL*VAASPPVKVKGRP 497
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 408 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 313
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,702
Number of Sequences: 27780
Number of extensions: 369214
Number of successful extensions: 1753
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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