Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F04
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 158 9e-40
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 158 9e-40
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.74
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 26 5.2
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 26 5.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 6.9
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.2
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.2
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 158 bits (383), Expect = 9e-40
Identities = 75/116 (64%), Positives = 86/116 (74%)
Frame = -3
Query: 625 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
RGKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1
Query: 735 GTIEDKXKWXREHLEKPIPVDSVFAQDEMIDCIXVTQGAKDTKVSLLVGTQRSYPVRHTR 556
G++ DK +W REH EK + + S F Q+EMID I VT+G + + GT+R P + R
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 555 VLGKLPAL 532
L K+ +
Sbjct: 245 GLRKVACI 252
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 158 bits (383), Expect = 9e-40
Identities = 75/116 (64%), Positives = 86/116 (74%)
Frame = -3
Query: 625 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
RGKG +G T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N K
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSK 281
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 282 IYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1
Query: 735 GTIEDKXKWXREHLEKPIPVDSVFAQDEMIDCIXVTQGAKDTKVSLLVGTQRSYPVRHTR 556
G++ DK +W REH EK + + S F Q+EMID I VT+G + + GT+R P + R
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 555 VLGKLPAL 532
L K+ +
Sbjct: 245 GLRKVACI 252
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 368 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 707 PENIWRNLSLSILCLPKMK*LTAXVSPKGQRIQRCH 600
P +W IL K K TA +PK + +QR H
Sbjct: 108 PFRVWYETHYGILMGSKGKKATATPTPKSKHVQRKH 143
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = -3
Query: 688 TYPCRFCVCPR*ND*LHXCHPRGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 509
T+ CR C+ N+ + H +GK ++ +R + + + + I H +V
Sbjct: 53 TFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSH-VQV 111
Query: 508 SFTVARAGQKGY 473
+V + G+ GY
Sbjct: 112 KKSVVKIGRPGY 123
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 577 ASLCANEK*HLCILCPLGDTN-AVNHFI 657
A+ C N HL P DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 526 KLQCRQLS*DPCVSYGVASLCANEK*HLCILCPLGDTN 639
+L RQLS V+ G+ LC + +C+ P D++
Sbjct: 67 RLNDRQLSCVESVTNGIGLLCLKQADQVCLFTPTVDSH 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,402
Number of Sequences: 5004
Number of extensions: 69272
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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