Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F04
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 166 1e-41
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 166 1e-41
11_04_0146 - 14091671-14092357,14092996-14093229 31 1.3
04_04_1321 + 32634471-32634566,32635102-32635193,32635290-326355... 29 5.4
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 29 5.4
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.2
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 7.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 166 bits (404), Expect = 1e-41
Identities = 75/116 (64%), Positives = 91/116 (78%)
Frame = -3
Query: 625 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
+GKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 106 bits (254), Expect = 2e-23
Identities = 80/206 (38%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Frame = -1
Query: 735 GTIEDKXKWXREHLEKPIPVDSVFAQDEMIDCIXVTQGAKDTKVSLLVGTQRSYPVRHTR 556
GTI DK + + EK IPVD+VF +DEMID I VT+G V G R P + R
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHR 247
Query: 555 VLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLKTMHLLS 376
L K+ + G R V TV + + E K++ K+ K+
Sbjct: 248 GLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESH 296
Query: 375 MICLRNPLHRWEVSPI-------MVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAA 217
C +++P+ +VK + KGCC+GPKKR++TLR+SL T R A
Sbjct: 297 AACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLA 354
Query: 216 LEKINLKFIDTSSKFGHGRFQTPADK 139
LE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEK 380
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 166 bits (404), Expect = 1e-41
Identities = 75/116 (64%), Positives = 91/116 (78%)
Frame = -3
Query: 625 RGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
+GKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 113 bits (272), Expect = 1e-25
Identities = 84/214 (39%), Positives = 110/214 (51%), Gaps = 7/214 (3%)
Frame = -1
Query: 735 GTIEDKXKWXREHLEKPIPVDSVFAQDEMIDCIXVTQGAKDTKVSLLVGTQRSYPVRHTR 556
GTI DK + + EK IPVD+VF +DEMID I VT+G V G R P + R
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHR 247
Query: 555 VLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLKTMHLLS 376
L K+ + G R V TV + + E K++ K+ K+
Sbjct: 248 GLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESH 296
Query: 375 MICLRNPLHRWEVSPI-------MVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKRAA 217
C +++P+ +VK + KGCC+GPKKR++TLR+SL T R A
Sbjct: 297 AACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQSLLKQTSRLA 354
Query: 216 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
LE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 619 KGYKGVTSRWHTKKLPRKTHKGLRKVACIGAW 524
K YK T RWH K++ K K KV +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>04_04_1321 +
32634471-32634566,32635102-32635193,32635290-32635585,
32635665-32635863,32636019-32636223,32637001-32637093
Length = 326
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 758 HYGIQLNGVPSRTX*NGPENIWRNLSLSILCLPKMK*LTAXVSPKGQRIQRCHFS 594
HY ++ GVP NI N ++ +L PK K T S K R+Q+CH S
Sbjct: 23 HYTTKIGGVPVHAP-VAKFNI-ENRTIYVLVCPKPKCGTNPQSWKVLRVQKCHTS 75
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 619 KGYKGVTSRWHTKKLPRKTHKGLRKV 542
K YK T RWH K++ K K KV
Sbjct: 29 KIYKDKTKRWHDKRIKHKEFKAREKV 54
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -3
Query: 517 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 368
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 367 SEKSITPMGGFPHYGEVNN 311
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGLHLRL 60
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,763,992
Number of Sequences: 37544
Number of extensions: 468110
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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