Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_F03
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 127 2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 124 2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 8e-05
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.44
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.0
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 127 bits (307), Expect = 2e-30
Identities = 60/90 (66%), Positives = 69/90 (76%)
Frame = -2
Query: 625 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 446
EPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+L
Sbjct: 120 EPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYL 179
Query: 445 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
LAREVLR+RG L R WDV+ DL+FYR P
Sbjct: 180 LAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 69.7 bits (163), Expect = 4e-13
Identities = 32/52 (61%), Positives = 36/52 (69%)
Frame = -1
Query: 785 VVAIENPXDVFVXSSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAF 630
+ IENP DV V S+R +G RAV KF AHTG T IAGRFTPG FTN I +
Sbjct: 67 IATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 124 bits (298), Expect = 2e-29
Identities = 59/90 (65%), Positives = 68/90 (75%)
Frame = -2
Query: 625 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 446
EPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+L
Sbjct: 121 EPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYL 180
Query: 445 LAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
LAREVLRLRG + R W+V+ DL+FYR P
Sbjct: 181 LAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 74.1 bits (174), Expect = 2e-14
Identities = 34/52 (65%), Positives = 37/52 (71%)
Frame = -1
Query: 785 VVAIENPXDVFVXSSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAF 630
+ IENP DV V SSRP+G RAV KF AHTG T IAGRFTPG FTN I +
Sbjct: 68 IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 42.3 bits (95), Expect = 8e-05
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = -2
Query: 658 LLLTRSKLHSXEPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 479
L+ T K P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 478 SSHSIGLMWWLLAR 437
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 351 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 643 SKLHSXEPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSS 473
++ + +P + ++ D + T A + + LC+ +S RF D+A+ NTK +
Sbjct: 49 ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFT 107
Query: 472 HSI 464
H I
Sbjct: 108 HFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 420 VVCFPVTSAGMLWLICSSTVXPEESEKD 337
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,207
Number of Sequences: 5004
Number of extensions: 52130
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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