Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_E23
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 152 5e-38
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 149 3e-37
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.2
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 6.9
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 152 bits (369), Expect = 5e-38
Identities = 76/125 (60%), Positives = 91/125 (72%)
Frame = -1
Query: 703 GXTXIAGRFTXRCFY*XRSKLHFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSP 524
G T IAGRFT F ++ +REPRL++V DP D Q I EAS+VNIPVIALC+TDS
Sbjct: 97 GATAIAGRFTPGNFTNYITRT-YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSI 155
Query: 523 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKD 344
L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++
Sbjct: 156 LNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVERE 215
Query: 343 EQQAK 329
E+ K
Sbjct: 216 EEAKK 220
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 761 VXSSXPFGQRAVLKFAAHTRXYAYCG 684
V S+ +G RAVLKFAAHT A G
Sbjct: 78 VVSTRTYGHRAVLKFAAHTGATAIAG 103
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 149 bits (362), Expect = 3e-37
Identities = 75/123 (60%), Positives = 90/123 (73%)
Frame = -1
Query: 703 GXTXIAGRFTXRCFY*XRSKLHFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSP 524
G T IAGRFT F ++ +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS
Sbjct: 98 GATAIAGRFTPGNFTNYITRT-YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSI 156
Query: 523 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKD 344
L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++
Sbjct: 157 LNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIERE 216
Query: 343 EQQ 335
E+Q
Sbjct: 217 EEQ 219
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = -3
Query: 761 VXSSXPFGQRAVLKFAAHTRXYAYCG 684
V SS P+G RAVLKFAAHT A G
Sbjct: 79 VISSRPYGHRAVLKFAAHTGATAIAG 104
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 628 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 449
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 448 AR 443
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 580 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 470
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 472 IGLMWWLLAREVLRLRGVLPRDQRWD 395
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 640 HFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 509
HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 263 HFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 417 FPVTSAGML--WLICSSTVTLKKVKRM 343
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,995
Number of Sequences: 5004
Number of extensions: 52871
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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