Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E11
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.0  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 581 PXPHXSVAAEPGVGEGPLPDSRXPVD--GGFPP 489
           P P+  V  EP  GE PLPD   P +   G PP
Sbjct: 108 PLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPP 140


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 580 PXRTYPSPPSRGSEKGLCPTPGPL*MAASPPVKVKGRP 467
           P   YP  P++    G  P PG   M A  PV  +GRP
Sbjct: 509 PMPMYPGMPTQFPAGG--PAPGYPGMNARGPVPAQGRP 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,543
Number of Sequences: 5004
Number of extensions: 37143
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)