Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E11
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    29   4.1  
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    29   5.4  
01_01_0846 - 6606054-6606239                                           29   5.4  
01_03_0110 + 12633492-12633751,12634616-12634715,12635990-126360...    28   9.4  

>02_03_0300 +
           17454622-17455402,17455535-17456977,17457015-17457317,
           17458429-17458519,17458623-17459757,17459998-17460077,
           17460449-17460533,17460614-17460705,17461079-17461147,
           17461227-17461263,17461351-17461433,17461695-17461840,
           17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +1

Query: 70  GVCET----QRSAGVESRSRAQGF*DPPTKRLPCTLTPDEVGGLPRSTLQPDGA 219
           GVC T    QRS  +E    ++ + DP    LPCT     +G   + T  PD A
Sbjct: 444 GVCTTLADVQRSMALEESRSSRQYTDPT---LPCTSNTHFIGSCAQHTNSPDSA 494


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 571 TYPSPPSRGSEKGLCPTPGPL*MAASPPVKVKGRP 467
           T   P   G E    P P PL   A+PPV+ +GRP
Sbjct: 557 TATQPMQGGVEPFFAPLPPPL--VATPPVRRRGRP 589


>01_01_0846 - 6606054-6606239
          Length = 61

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 236 ASLG*AAPSGCSVDRGSPPTSSGVRVQG 153
           A+LG   P  CSV +GS   SSGV V G
Sbjct: 2   AALGWEEPRRCSVGKGSGGRSSGVAVLG 29


>01_03_0110 +
           12633492-12633751,12634616-12634715,12635990-12636085,
           12636670-12636717,12636819-12636914
          Length = 199

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 171 RRGRGATAVNTTTRRRGSPQGRPA 242
           RRG G   +++++R R  P  RPA
Sbjct: 51  RRGEGKVKISSSSRARAKPMSRPA 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,781
Number of Sequences: 37544
Number of extensions: 372310
Number of successful extensions: 1389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)