Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E11
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 137 HPLNDSPALLHPTR*GGYRGQHYNQTARLTPRTP 238
           HP    P+  HP R      QH N T   T   P
Sbjct: 317 HPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPP 350


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 147 TTPLHSYTRRGRGA 188
           +TP+ ++ R+GRGA
Sbjct: 185 STPVEAHLRKGRGA 198


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 370 PAGWFWSSGVFRGTSGTV 317
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,645
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)