Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E09
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical p...    31   0.95 
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   5.1  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   5.1  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    28   8.9  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical
           protein F25B5.7b protein.
          Length = 165

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 691 R*YVGEVKCPLEIKVTLLXNLHTPRHDLCKCSVRSRGPHTLKILSN 554
           R +VG +  P E+K T L  L +P  D+ +C +  +G   L+++SN
Sbjct: 117 RLFVGNL--PNEVKETELKELFSPHGDIAECYLSGKGFAFLRLISN 160


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 511  PRGSDGYPAKTGLNNLKG 564
            PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 511  PRGSDGYPAKTGLNNLKG 564
            PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 511  PRGSDGYPAKTGLNNLKG 564
            PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 502 PDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEH 597
           P+ PRG  G P +TG +  +G     GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 366 PADRMESSRRRPKHVISDPPDP 301
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,114
Number of Sequences: 27780
Number of extensions: 306870
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)