Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_E08
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.19
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 28 1.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.3
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.1
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 7.1
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 26 7.1
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 9.4
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 535 PSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMA 356
PS V++ N P ++++EQ++ +FK G + P + G E+ + + + A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 355 IMACNH 338
+ N+
Sbjct: 63 VRNLNN 68
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -2
Query: 511 NTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHAT 332
N P DVS++Q+ ++F G + P G EF + + MA+ N++
Sbjct: 13 NIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSE 72
Query: 331 I 329
+
Sbjct: 73 L 73
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -2
Query: 616 PSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
P+ K V +N ++I++ + PP+KVL N P +V+ + L Q+F+ +
Sbjct: 146 PTHKKPVPKRNVGAERKSTINEDLL-PPNKVLLLQNIPQEVNADVLTQIFEAF 197
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 571 TPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVF 467
TP + + PP ++ N PP S+E+L +F
Sbjct: 412 TPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLF 446
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 539 LYSVLVYRGRR*XAIVLVTHVIFERRTLVGKRI 637
L +V+ + RR AI L V FER T VGK +
Sbjct: 626 LQTVVCTQPRRISAISLAERVAFERDTTVGKEV 658
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 646 MNPYPLPDKSPSFKDYVGNKNNRXLTPASIHKXR 545
+N YPLP P+FK V K N + +S H +
Sbjct: 69 LNSYPLPSAPPNFKS-VCTKTNHPESSSSRHSKK 101
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -2
Query: 481 LLQVFKDYG-VTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHAT--IQHPG 317
L+ FKD + T SK P S+ SS ++ A+ CN AT I PG
Sbjct: 14 LVSAFKDTSPIFLFSTNSKLPKSSDDSSISTCPMMFFDAAIEALSTCNTATLIIHQPG 71
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 574 LTPASIHKXRIQPPSKVLHFFNTPP--DVSDEQLLQVFKDYGVTPPHTIS-KFPLKSERS 404
LTP HK + HFF+ P VS + L+ G++ +TIS F + +
Sbjct: 177 LTPQETHKNKSFERDDQKHFFDRPAFLTVSTQLHLEALA-LGLSRVYTISPAFRAEQSHT 235
Query: 403 SSGLMEFQNISQSVMAIMACNHAT 332
S L EF + V + + + T
Sbjct: 236 SRHLAEFWMLEAEVAFMTSLSQLT 259
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 526 VLHFFNTPPDVSDEQLLQ 473
VLHFF T DV D++L +
Sbjct: 819 VLHFFGTMTDVHDQKLAE 836
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,703
Number of Sequences: 5004
Number of extensions: 46368
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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