Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_E08
(788 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X16135-1|CAA34261.1| 558|Homo sapiens protein ( Human mRNA for ... 111 2e-24
BC069184-1|AAH69184.1| 558|Homo sapiens HNRPL protein protein. 111 2e-24
AB044547-1|BAB18649.1| 589|Homo sapiens heterogeneous nuclear r... 111 2e-24
BC017480-1|AAH17480.1| 542|Homo sapiens heterogeneous nuclear r... 85 2e-16
AY236963-1|AAQ20084.2| 537|Homo sapiens stromal RNA regulating ... 85 2e-16
AY236962-1|AAQ20083.1| 508|Homo sapiens stromal RNA regulating ... 85 2e-16
AF461722-1|AAN76189.1| 537|Homo sapiens BLOCK24 variant protein. 85 2e-16
AC011247-1|AAY24302.1| 542|Homo sapiens unknown protein. 85 2e-16
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 43 0.001
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 43 0.001
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 43 0.001
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 43 0.001
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 43 0.001
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 43 0.001
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 43 0.001
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 43 0.001
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 43 0.001
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 43 0.001
BC016582-1|AAH16582.1| 532|Homo sapiens polypyrimidine tract bi... 42 0.002
AL357150-4|CAH70267.1| 537|Homo sapiens polypyrimidine tract bi... 42 0.002
AL357150-2|CAH70268.1| 532|Homo sapiens polypyrimidine tract bi... 42 0.002
AF530580-1|AAM94624.1| 537|Homo sapiens non-neuronal splice var... 42 0.002
AB051232-1|BAB71742.1| 532|Homo sapiens PTB-like protein L prot... 42 0.002
AL357150-5|CAH70269.1| 531|Homo sapiens polypyrimidine tract bi... 40 0.008
AL357150-3|CAH70266.1| 536|Homo sapiens polypyrimidine tract bi... 40 0.008
AF530581-1|AAM94625.1| 536|Homo sapiens non-neuronal splice var... 40 0.008
AF176085-1|AAF14284.1| 531|Homo sapiens neural polypyrimidine t... 40 0.008
BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein. 39 0.024
AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of diffe... 39 0.024
AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of diffe... 39 0.024
AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of diffe... 39 0.024
AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of diffe... 39 0.024
AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein. 39 0.024
BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulat... 36 0.17
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 34 0.67
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 34 0.67
AJ406941-1|CAC27580.1| 191|Homo sapiens keratin associated prot... 34 0.67
AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa... 34 0.67
AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa... 34 0.67
BC126423-1|AAI26424.1| 210|Homo sapiens keratin associated prot... 33 0.89
BC126421-1|AAI26422.1| 210|Homo sapiens keratin associated prot... 33 0.89
AJ406939-1|CAC27578.1| 210|Homo sapiens keratin associated prot... 33 0.89
BC130562-1|AAI30563.1| 195|Homo sapiens keratin associated prot... 30 8.3
BC126131-1|AAI26132.1| 195|Homo sapiens keratin associated prot... 30 8.3
AJ406944-1|CAC27583.1| 195|Homo sapiens keratin associated prot... 30 8.3
AJ406935-1|CAC27574.1| 98|Homo sapiens keratin associated prot... 30 8.3
>X16135-1|CAA34261.1| 558|Homo sapiens protein ( Human mRNA for
novel heterogeneous nuclear RNP protein, L protein. ).
Length = 558
Score = 111 bits (268), Expect = 2e-24
Identities = 51/122 (41%), Positives = 79/122 (64%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
Y L D S S+KD+ ++NNR TP K RIQ PS VLHFFN P +V++E ++ +
Sbjct: 434 YGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 493
Query: 457 GVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFSS 278
GV P ++ F KSERSSSGL+E+++ S ++ + NH +++P +P+ +KLCFS+
Sbjct: 494 GVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFST 553
Query: 277 SR 272
++
Sbjct: 554 AQ 555
>BC069184-1|AAH69184.1| 558|Homo sapiens HNRPL protein protein.
Length = 558
Score = 111 bits (268), Expect = 2e-24
Identities = 51/122 (41%), Positives = 79/122 (64%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
Y L D S S+KD+ ++NNR TP K RIQ PS VLHFFN P +V++E ++ +
Sbjct: 434 YGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 493
Query: 457 GVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFSS 278
GV P ++ F KSERSSSGL+E+++ S ++ + NH +++P +P+ +KLCFS+
Sbjct: 494 GVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFST 553
Query: 277 SR 272
++
Sbjct: 554 AQ 555
>AB044547-1|BAB18649.1| 589|Homo sapiens heterogeneous nuclear
ribonucleoprotein L protein.
Length = 589
Score = 111 bits (268), Expect = 2e-24
Identities = 51/122 (41%), Positives = 79/122 (64%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
Y L D S S+KD+ ++NNR TP K RIQ PS VLHFFN P +V++E ++ +
Sbjct: 465 YGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 524
Query: 457 GVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFSS 278
GV P ++ F KSERSSSGL+E+++ S ++ + NH +++P +P+ +KLCFS+
Sbjct: 525 GVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFST 584
Query: 277 SR 272
++
Sbjct: 585 AQ 586
>BC017480-1|AAH17480.1| 542|Homo sapiens heterogeneous nuclear
ribonucleoprotein L-like protein.
Length = 542
Score = 85.4 bits (202), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
+ L D + S+KD+ +KNNR + K IQPPS VLH++N P V++E ++ D+
Sbjct: 418 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 477
Query: 457 GVTPPHTISKFPLK-SERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFS 281
V F K S ++ SGL+E++ + +V A+ A NH I+ P P+ +KLCFS
Sbjct: 478 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFS 537
Query: 280 SSRQI 266
+S +
Sbjct: 538 TSSHL 542
>AY236963-1|AAQ20084.2| 537|Homo sapiens stromal RNA regulating
factor protein.
Length = 537
Score = 85.4 bits (202), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
+ L D + S+KD+ +KNNR + K IQPPS VLH++N P V++E ++ D+
Sbjct: 413 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 472
Query: 457 GVTPPHTISKFPLK-SERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFS 281
V F K S ++ SGL+E++ + +V A+ A NH I+ P P+ +KLCFS
Sbjct: 473 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFS 532
Query: 280 SSRQI 266
+S +
Sbjct: 533 TSSHL 537
>AY236962-1|AAQ20083.1| 508|Homo sapiens stromal RNA regulating
factor protein.
Length = 508
Score = 85.4 bits (202), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
+ L D + S+KD+ +KNNR + K IQPPS VLH++N P V++E ++ D+
Sbjct: 384 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 443
Query: 457 GVTPPHTISKFPLK-SERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFS 281
V F K S ++ SGL+E++ + +V A+ A NH I+ P P+ +KLCFS
Sbjct: 444 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFS 503
Query: 280 SSRQI 266
+S +
Sbjct: 504 TSSHL 508
>AF461722-1|AAN76189.1| 537|Homo sapiens BLOCK24 variant protein.
Length = 537
Score = 85.4 bits (202), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
+ L D + S+KD+ +KNNR + K IQPPS VLH++N P V++E ++ D+
Sbjct: 413 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 472
Query: 457 GVTPPHTISKFPLK-SERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFS 281
V F K S ++ SGL+E++ + +V A+ A NH I+ P P+ +KLCFS
Sbjct: 473 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFS 532
Query: 280 SSRQI 266
+S +
Sbjct: 533 TSSHL 537
>AC011247-1|AAY24302.1| 542|Homo sapiens unknown protein.
Length = 542
Score = 85.4 bits (202), Expect = 2e-16
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -2
Query: 637 YPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDY 458
+ L D + S+KD+ +KNNR + K IQPPS VLH++N P V++E ++ D+
Sbjct: 418 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 477
Query: 457 GVTPPHTISKFPLK-SERSSSGLMEFQNISQSVMAIMACNHATIQHPGAKFPFVMKLCFS 281
V F K S ++ SGL+E++ + +V A+ A NH I+ P P+ +KLCFS
Sbjct: 478 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFS 537
Query: 280 SSRQI 266
+S +
Sbjct: 538 TSSHL 542
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 454 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 509
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 510 FKFFQKDRKMALIQMGSVEEAVQALI 535
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 454 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 509
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 510 FKFFQKDRKMALIQMGSVEEAVQALI 535
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 447 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 502
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 503 FKFFQKDRKMALIQMGSVEEAVQALI 528
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 428 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 483
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 484 FKFFQKDRKMALIQMGSVEEAVQALI 509
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 428 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 483
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 484 FKFFQKDRKMALIQMGSVEEAVQALI 509
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 454 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 509
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 510 FKFFQKDRKMALIQMGSVEEAVQALI 535
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 454 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 509
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 510 FKFFQKDRKMALIQMGSVEEAVQALI 535
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 428 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 483
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 484 FKFFQKDRKMALIQMGSVEEAVQALI 509
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 454 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 509
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 510 FKFFQKDRKMALIQMGSVEEAVQALI 535
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KDY + +R P S + I PPS LH N PP VS+E L +F G +
Sbjct: 428 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG----GVVKG 483
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + L++ ++ ++V A++
Sbjct: 484 FKFFQKDRKMALIQMGSVEEAVQALI 509
>BC016582-1|AAH16582.1| 532|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 532
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 429 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 484
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F L++ + +++ A++
Sbjct: 485 FKFFQRDHKMALLQMATVEEAIQALI 510
>AL357150-4|CAH70267.1| 537|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 537
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 434 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 489
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F L++ + +++ A++
Sbjct: 490 FKFFQRDHKMALLQMATVEEAIQALI 515
>AL357150-2|CAH70268.1| 532|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 532
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 429 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 484
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F L++ + +++ A++
Sbjct: 485 FKFFQRDHKMALLQMATVEEAIQALI 510
>AF530580-1|AAM94624.1| 537|Homo sapiens non-neuronal splice
variant nPTB3 protein.
Length = 537
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 434 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 489
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F L++ + +++ A++
Sbjct: 490 FKFFQRDHKMALLQMATVEEAIQALI 515
>AB051232-1|BAB71742.1| 532|Homo sapiens PTB-like protein L
protein.
Length = 532
Score = 42.3 bits (95), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 429 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 484
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F L++ + +++ A++
Sbjct: 485 FKFFQRDHKMALLQMATVEEAIQALI 510
>AL357150-5|CAH70269.1| 531|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 531
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 429 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 484
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + + L++ + +++ A++
Sbjct: 485 FKFFQDHKMA-LLQMATVEEAIQALI 509
>AL357150-3|CAH70266.1| 536|Homo sapiens polypyrimidine tract
binding protein 2 protein.
Length = 536
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 434 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 489
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + + L++ + +++ A++
Sbjct: 490 FKFFQDHKMA-LLQMATVEEAIQALI 514
>AF530581-1|AAM94625.1| 536|Homo sapiens non-neuronal splice
variant nPTB4 protein.
Length = 536
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 434 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 489
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + + L++ + +++ A++
Sbjct: 490 FKFFQDHKMA-LLQMATVEEAIQALI 514
>AF176085-1|AAF14284.1| 531|Homo sapiens neural polypyrimidine
tract binding protein protein.
Length = 531
Score = 40.3 bits (90), Expect = 0.008
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V++E L +F + G T+
Sbjct: 429 KDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTG----GTVKA 484
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIM 350
F + + L++ + +++ A++
Sbjct: 485 FKFFQDHKMA-LLQMATVEEAIQALI 509
>BC044585-1|AAH44585.1| 558|Homo sapiens ROD1 protein protein.
Length = 558
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 455 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 510
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 511 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 541
>AL359073-2|CAI14113.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 449 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 504
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 505 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 535
>AL158824-9|CAI12354.1| 457|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 457
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 354 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 409
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 410 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 440
>AL158824-8|CAI12353.1| 524|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 524
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 421 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 476
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 477 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 507
>AL158824-5|CAI12350.1| 552|Homo sapiens ROD1 regulator of
differentiation 1 (S. pombe) protein.
Length = 552
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 449 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 504
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 505 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 535
>AB023967-1|BAA75466.1| 521|Homo sapiens Rod1 protein.
Length = 521
Score = 38.7 bits (86), Expect = 0.024
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
KD+ + +R P S + I PPS LH N PP V+ + L +F + G ++
Sbjct: 418 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGC----SVKA 473
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NH 338
F + L++ ++ +++ A++ NH
Sbjct: 474 FKFFQKDRKMALIQLGSVEEAIQALIELHNH 504
>BC039896-1|AAH39896.1| 618|Homo sapiens Similar to ROD1 regulator
of differentiation 1 (S. pombe) protein.
Length = 618
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYG 455
KD+ + +R P S + I PPS LH N PP V+ + L +F + G
Sbjct: 492 KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG 542
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform
B protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 1546
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 1546
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) protein.
Length = 5202
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AJ406941-1|CAC27580.1| 191|Homo sapiens keratin associated protein
4.9 protein.
Length = 191
Score = 33.9 bits (74), Expect = 0.67
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 567 RPLYTXTEYNHPLRCCISSTRPQTCLTNSCCK 472
RP T HP RCCISS +C +SCCK
Sbjct: 87 RPSCCETTCCHP-RCCISSCCRPSCCVSSCCK 117
>AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 33.9 bits (74), Expect = 0.67
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 103 SGQCVC----VAFRLDMCEFVFCAASPFNSIRARPCRC 204
SGQC C + R D C F F FN + PC+C
Sbjct: 712 SGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQC 749
>BC126423-1|AAI26424.1| 210|Homo sapiens keratin associated protein
4-7 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.89
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 567 RPLYTXTEYNHPLRCCISSTRPQTCLTNSCCK 472
RP T HP RCCISS +C +SCCK
Sbjct: 66 RPSCCETTCCHP-RCCISSCCRPSCCMSSCCK 96
>BC126421-1|AAI26422.1| 210|Homo sapiens keratin associated protein
4-7 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.89
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 567 RPLYTXTEYNHPLRCCISSTRPQTCLTNSCCK 472
RP T HP RCCISS +C +SCCK
Sbjct: 66 RPSCCETTCCHP-RCCISSCCRPSCCMSSCCK 96
>AJ406939-1|CAC27578.1| 210|Homo sapiens keratin associated protein
4.7 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.89
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 567 RPLYTXTEYNHPLRCCISSTRPQTCLTNSCCK 472
RP T HP RCCISS +C +SCCK
Sbjct: 66 RPSCCETTCCHP-RCCISSCCRPSCCMSSCCK 96
>BC130562-1|AAI30563.1| 195|Homo sapiens keratin associated protein
4-14 protein.
Length = 195
Score = 30.3 bits (65), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 528 RCCISSTRPQTCLTNSCCK 472
RCCISS +C +SCCK
Sbjct: 68 RCCISSCCRPSCCVSSCCK 86
>BC126131-1|AAI26132.1| 195|Homo sapiens keratin associated protein
4-14 protein.
Length = 195
Score = 30.3 bits (65), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 528 RCCISSTRPQTCLTNSCCK 472
RCCISS +C +SCCK
Sbjct: 68 RCCISSCCRPSCCVSSCCK 86
>AJ406944-1|CAC27583.1| 195|Homo sapiens keratin associated protein
4.14 protein.
Length = 195
Score = 30.3 bits (65), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 528 RCCISSTRPQTCLTNSCCK 472
RCCISS +C +SCCK
Sbjct: 68 RCCISSCCRPSCCVSSCCK 86
>AJ406935-1|CAC27574.1| 98|Homo sapiens keratin associated protein
4.3 protein.
Length = 98
Score = 30.3 bits (65), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -3
Query: 525 CCISSTRPQTCLTNSCCK--CSRTT 457
CCISS +C +SCCK C +TT
Sbjct: 7 CCISSCCRPSCCISSCCKPSCCQTT 31
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,635,672
Number of Sequences: 237096
Number of extensions: 1829573
Number of successful extensions: 4592
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4554
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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