Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_E08
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 95 5e-20
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 1.6
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 1.6
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 1.6
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 6.6
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 95.1 bits (226), Expect = 5e-20
Identities = 48/144 (33%), Positives = 77/144 (53%)
Frame = -2
Query: 673 SKQXYLSEVMNPYPLPDKSPSFKDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDV 494
S Q + + +P+ LPD SPSFKDY ++N R TP K RI P+ LH+FN P +
Sbjct: 380 SHQECVHHLRDPFLLPDGSPSFKDYSSSRNQRFSTPELAAKNRIIFPTNTLHWFNAPGTM 439
Query: 493 SDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACNHATIQHPGA 314
++ LL + + P I FP ++ERS++G EF+ + + + NH + P
Sbjct: 440 DEQALLDLMAEKTEHKPVKIDIFPSRNERSAAGTAEFETVEIANEVLALVNHTPVNSPYG 499
Query: 313 KFPFVMKLCFSSSRQIGQGKGLKP 242
PF++K +++ R+ G G +P
Sbjct: 500 SAPFIVKWAYATPRR-WDGSGGEP 522
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
+DY + +R P S + I PP LH N P VS+E+L ++F + G +
Sbjct: 350 RDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAG----FAVKA 405
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NHATIQHPGAKFPF 302
F + L + ++I ++ A++A NH ++ + F
Sbjct: 406 FKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSF 448
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = -2
Query: 607 KDYVGNKNNRXLTPASIHKXRIQPPSKVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISK 428
+DY + +R P S + I PP LH N P VS+E+L ++F + G +
Sbjct: 512 RDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEEKLKEMFAEAG----FAVKA 567
Query: 427 FPLKSERSSSGLMEFQNISQSVMAIMAC-NHATIQHPGAKFPF 302
F + L + ++I ++ A++A NH ++ + F
Sbjct: 568 FKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSF 610
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 538 PPSKVLHFFNTPPDVSDEQLLQVFKDYG 455
P SKV+H N PPD+ D +L+Q+ YG
Sbjct: 118 PVSKVVHVRNIPPDLVDVELMQLCIQYG 145
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 502 PDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACN 341
PD+S+ L VF+ +G +++ P G +EF N++ AI N
Sbjct: 216 PDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMN 269
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 502 PDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACN 341
PD+S+ L VF+ +G +++ P G +EF N++ AI N
Sbjct: 216 PDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMN 269
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 502 PDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIMACN 341
PD+S+ L VF+ +G +++ P G +EF N++ AI N
Sbjct: 216 PDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMN 269
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = -2
Query: 529 KVLHFFNTPPDVSDEQLLQVFKDYGVTPPHTISKFPLKSERSSSGLMEFQNISQSVMAIM 350
+ L + P D ++E L QVF + G P+ + + +K E +EF ++ +
Sbjct: 68 RTLWIGDVPTDWTEETLSQVFTECG-HAPYKVKRVYVKDELKGYCFIEFITFDEARQTLY 126
Query: 349 ACNHATIQHPGAKFPFVMKLCFSS 278
N I PG K LCF++
Sbjct: 127 DLNGNRI--PGFK-DIRFNLCFAN 147
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 166 KRRRTQTHTYQDGRQHTHTDHY-EFXGGGGRGDLPVHRITD 47
+ ++T GRQ+++ +HY + GGGG G + T+
Sbjct: 240 QHNHNHSNTKDYGRQYSNHNHYSNYHGGGGPGSISARSRTE 280
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 219 SGKPRTTAWSSTNTIKRRSGAEHKLTHIKTE 127
S + R WS+TN ++R A+ K+ H K +
Sbjct: 168 SSEARENFWSTTNQEEKRRQADEKVAHAKQQ 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,018
Number of Sequences: 27780
Number of extensions: 285814
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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