Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E07
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   181   9e-47
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   2.3  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   3.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   4.1  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.4  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  181 bits (441), Expect = 9e-47
 Identities = 77/122 (63%), Positives = 104/122 (85%)
 Frame = -2

Query: 581 WSYENHKDETYXRRVIKPLEGLLXAHKRIFIKDSAVNAVXYGAKVLLPGILRYEDGIEVD 402
           W Y+N +DE+Y RRVI+PLE LL  +KRI +KDSAVNA+ YGAK+++PG+LRYE GIEV+
Sbjct: 246 WIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVN 305

Query: 401 QEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKK 222
           +EIV++TTKGEA+A+ +A M+T  +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK
Sbjct: 306 EEIVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKK 365

Query: 221 IL 216
            L
Sbjct: 366 TL 367



 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -3

Query: 229 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 131
           +KK+   +GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 166 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 23
           PK + N+    N+KK   +GD     +  R A+ A+A D +V    KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 208 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 80
           QG+LD + KP  ++PK+ +++    + K++ ++  G E   ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 271 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 441
           S   +T +S  +T  ++  + VD+    TA++T        T+S+ST +P+  S L  P 
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272

Query: 442 NS 447
           +S
Sbjct: 273 SS 274


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 116 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 289
           RF+L+   D + + P  W   ++ + +F + P  +     +R   RDP+ W   L+   H
Sbjct: 62  RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121

Query: 290 A 292
           A
Sbjct: 122 A 122


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 151 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 41
           N YV+ N   E  +GD + E  R R +     ++ D+
Sbjct: 3   NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 160 LLVCSHLVCHICQVSLXCM 216
           +L C+H +CH+C + L  +
Sbjct: 93  VLPCNHRMCHVCALRLRAL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,190
Number of Sequences: 5004
Number of extensions: 46073
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)