Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E04
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +2

Query: 446 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 562
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 500  HRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSIFLP 619
            H + LH P +     ++R    G+  ++V   SD   F+P
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVP 1521


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +2

Query: 338 SQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH--ALHRKN 511
           S   LP     T T  T+  A    T +T+ T            HL + H H  +   ++
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQD 158

Query: 512 LHPPAEPEHRRIARHER 562
            H P + + ++  R ++
Sbjct: 159 HHRPYQQQQQQQQRQQQ 175


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 546 SPDTNAPDVLSYRSRRLQMCQFFFPAETCLL 638
           S D   PD+  Y S  +   Q   P  TCL+
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGIPPTTCLV 151


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 4   FFFFLRLHSDLEW 42
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 624  PRGRKIDTSEVVVTCKIRRP 565
            P GR + ++E++V  + +RP
Sbjct: 987  PAGRSVPSAELIVRTEPQRP 1006


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 624  PRGRKIDTSEVVVTCKIRRP 565
            P GR + ++E++V  + +RP
Sbjct: 983  PAGRSVPSAELIVRTEPQRP 1002


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 415 RKIVVCVVAGKICCGK 368
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,057
Number of Sequences: 438
Number of extensions: 4597
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)