Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_E03
         (909 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110210-1|CAB53676.1|  990|Homo sapiens hypothetical protein pr...    33   1.1  
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          33   1.9  

>AL110210-1|CAB53676.1|  990|Homo sapiens hypothetical protein
           protein.
          Length = 990

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
 Frame = +1

Query: 376 PXAXIHXXLXXXRXDLPTXAHTXXXPXPXXPXPPCXXAXPXXL-PPPXXXXXGXQXXXVX 552
           P   +H  L       P  AH+   P P  P PP     P    P P     G Q   + 
Sbjct: 364 PPPPLHTQLYPGPAQDPLPAHSGALPFPS-PGPPQPPHPPLAYGPAPSTRPMGPQAAPLT 422

Query: 553 SXXXXXXGXTSSPXXHAXXPXXPTPXSRXVAXPP*QXXPXPPXFXRXXA 699
                  G  S+P  H   P  P+P    V   P    P PP   R  A
Sbjct: 423 IRGPSSAGQ-STPSPHLVPPPAPSPGPGPVPPRPPAAEP-PPCLRRGAA 469


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/78 (25%), Positives = 22/78 (28%)
 Frame = +1

Query: 457 PXXPXPPCXXAXPXXLPPPXXXXXGXQXXXVXSXXXXXXGXTSSPXXHAXXPXXPTPXSR 636
           P  P P      P   PPP     G                   P      P  P P S 
Sbjct: 33  PPAPGPGAGLLAPGPPPPPPVGSMGALTAAFPFAALPPPPPPPPPPPPQQPPPPPPPPSP 92

Query: 637 XVAXPP*QXXPXPPXFXR 690
             + PP Q  P PP + R
Sbjct: 93  GASYPPPQPPPPPPLYQR 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,180,910
Number of Sequences: 237096
Number of extensions: 993428
Number of successful extensions: 2662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2600
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)