Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_D24
         (1018 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0016 + 110796-110979,111252-111768,111847-112213                 30   2.6  
06_01_0835 - 6315762-6316844                                           29   7.9  

>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 372 LXHXPHRPLXTLXXXPLXAPNPXXXAXXPXXXPRPVXXTPXXSWPXP 512
           L   P RP+      PL +P+P   A  P   P P+   P  S P P
Sbjct: 141 LLSQPLRPMD-FCPSPLTSPSPPALALAPSPIPTPIIAPPPVSSPAP 186


>06_01_0835 - 6315762-6316844
          Length = 360

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 371 PXXPXPPPAAXPXXAALXXAESP 439
           P  P PPPAA P  A L   E+P
Sbjct: 314 PPPPPPPPAALPEMANLDFTEAP 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,752
Number of Sequences: 37544
Number of extensions: 166329
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)