Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_D11
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   244   1e-65
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   244   1e-65
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.73 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.97 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   5.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  244 bits (596), Expect = 1e-65
 Identities = 120/201 (59%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
 Frame = -3

Query: 709 REHLGETXXPVDSVFAPR*ND*LHLVS-PKGKGYKGVTSRWHTKKLPRKTHKGLRKVACI 533
           REH  +T   + S F    N+ + ++   +GKG +G T+RW TK+LPRKTH+GLRKVACI
Sbjct: 196 REHFEKTVD-IKSTFEQ--NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252

Query: 532 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 353
           GAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK I
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRI 305

Query: 352 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 173
           TPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKF
Sbjct: 306 TPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKF 365

Query: 172 GHGRFQTPADKAAFMGTLKKD 110
           GHGRFQTPA+   F+GTLKKD
Sbjct: 366 GHGRFQTPAEAKQFLGTLKKD 386



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 767 HIMESXXNGGTIEDKVKWTQ 708
           H+ME   NGG++ DKV+W +
Sbjct: 177 HLMEIQVNGGSVADKVEWAR 196


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  244 bits (596), Expect = 1e-65
 Identities = 120/201 (59%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
 Frame = -3

Query: 709 REHLGETXXPVDSVFAPR*ND*LHLVS-PKGKGYKGVTSRWHTKKLPRKTHKGLRKVACI 533
           REH  +T   + S F    N+ + ++   +GKG +G T+RW TK+LPRKTH+GLRKVACI
Sbjct: 196 REHFEKTVD-IKSTFEQ--NEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252

Query: 532 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 353
           GAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK I
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRI 305

Query: 352 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 173
           TPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKF
Sbjct: 306 TPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKF 365

Query: 172 GHGRFQTPADKAAFMGTLKKD 110
           GHGRFQTPA+   F+GTLKKD
Sbjct: 366 GHGRFQTPAEAKQFLGTLKKD 386



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 767 HIMESXXNGGTIEDKVKWTQ 708
           H+ME   NGG++ DKV+W +
Sbjct: 177 HLMEIQVNGGSVADKVEWAR 196


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 576 SFFVCQR-EVTPLYP--LPLGDTKCSQSFHLGANTESTGXXVSPRC 704
           S+F+C      P +P  LP G T C + F    ++ES+G     RC
Sbjct: 15  SYFICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRC 60


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 368 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 131 HGYTQEGSYSRRSCGYHNPS 72
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 631 SPKGKGYKGVTSRWHTKKLPRKTHK 557
           +PK K + G T  WH+   PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,334
Number of Sequences: 5004
Number of extensions: 71229
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)