Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_D09
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 98 1e-21
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 7e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 8e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 2e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 3e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 43 4e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 4e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 40 3e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 39 7e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 39 0.001
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 0.001
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.005
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 36 0.005
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.009
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 33 0.047
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 31 0.19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 31 0.19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 29 0.77
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 1.3
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 3.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 27 4.1
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 26 7.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 7.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 9.4
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.4
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 9.4
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.4
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 98.3 bits (234), Expect = 1e-21
Identities = 63/171 (36%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TDVAARGLD+P VDLV+QY AP S DY+H A+MFLLP E++++ L+
Sbjct: 503 TDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLK 562
Query: 513 QK---RIRLRQDDESKCLEALRSVAPA-APSVQRAAIALQARLEHTAHSSKEWLARASRA 346
I + + S L A S Q A Q LE ++ A RA
Sbjct: 563 SSVSANILEQPNGPSGLLSAGFSQGKTNTNDWQDRATEWQLELERFILENEPMRNIAKRA 622
Query: 345 YTSWVRFYSGYPRDVRQYLDPKLLHLGHAAKAFALRDTPAALARRTKSDPK 193
+TS+VR Y+ + R + + LHLGH AK+FALR+ P ++ S P+
Sbjct: 623 FTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAPGKISGANSSKPR 673
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.4 bits (135), Expect = 1e-09
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH-XXXXXXXXXXXXXAVMFLLPNEADFVRYL 517
T+VAARGLD+P VD ++QY P DY+H ++MFL P+E F+RYL
Sbjct: 393 TNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYL 452
Query: 516 EQKRIRLRQDDESKCLEALRSVAPAAPSVQRAAIALQARLEHTAHSSKEWLARASRAYTS 337
+ ++ L + + PA +Q++LE + A Y S
Sbjct: 453 KTAKVSLNEFE-----------FPA-----NKVANVQSQLEKLVSKNYYLQQSAKDGYRS 496
Query: 336 WVRFYSGYPRDVRQYLDPKLLHLGHAAKAFALRDTPAALARRTKSDPKLKKER 178
+++ Y+ Y ++ D L L AK+F P S KKER
Sbjct: 497 YLQAYASY--SLKSIFDINKLDLAKVAKSFGFAHPPNVNITIGASGRTDKKER 547
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.4 bits (120), Expect = 7e-08
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TD+ ARGLD P VD V+Q AP Y+H A++ LLP+E F++ LE
Sbjct: 342 TDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLE 401
Query: 513 QKRIRLRQ 490
K+I + +
Sbjct: 402 SKKIAVER 409
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.6 bits (103), Expect = 8e-06
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TDVA+RGLD+P V LV+ + P DY+H ++ + + D V +E
Sbjct: 315 TDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIE 374
Query: 513 Q----KRIRLRQDDESKCLEALRSVAPA 442
K E+K LE ++ V A
Sbjct: 375 DRVGTKLSEYEHVSENKMLEYIKEVTDA 402
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TDVAARGLD+P+V LV+ P + DYVH A+ F P + L
Sbjct: 473 TDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELV 532
Query: 513 QKRIRLRQD 487
+ +QD
Sbjct: 533 NVLRQAKQD 541
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -3
Query: 741 RXAGQLWTFSGTRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXA 562
R QL + L TD+A RG+D+P V LVL Y S DY H A
Sbjct: 557 RAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTA 616
Query: 561 VMFLLPNEADF---VRYLEQKRIRLRQDDESKCLEA 463
+ FL P + D +R L + + DE + EA
Sbjct: 617 ITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEA 652
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 714 SGTR--LNKTDVAARGLDVPRVDLVLQYCAPASATDYVH 604
SG R L TDVAARGLD+P VD+V+ Y P + Y+H
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 4e-05
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADF---VR 523
TDV ARG+D P + V+Q P++ DY+H A + LL E F ++
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIK 409
Query: 522 YLEQKRIRLRQDDESKCLEALRSVAPAAPSVQR--AAIALQARLEHTAHSSKEWLARASR 349
+L KR + + + L LRS + R A L H S + A
Sbjct: 410 HLPLKRATI-EPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATGKN 468
Query: 348 AYTSWVRFYS 319
+ S + +S
Sbjct: 469 IHESAIALFS 478
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = -3
Query: 720 TFSGTRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPN 541
T S L TD+ ARG+DV +V LV+ Y PA+ +Y+H ++ F+ +
Sbjct: 306 TGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTND 365
Query: 540 EADFVRYLEQ 511
+ +R +EQ
Sbjct: 366 DVRMMREIEQ 375
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = -3
Query: 708 TRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLP-NEAD 532
T L TD+A+RGLD+P VD VLQ P + H A++ L E +
Sbjct: 311 TVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEE 370
Query: 531 FVRYLEQKRIRLRQDDESKCLEALRSVAPAAPSVQRAAIALQARLEHTAHSSKEWLARAS 352
+ L +++ + + D +EAL + R + L L ++ +
Sbjct: 371 YEELLRVRKVPITRIDTP--IEAL--------DLSRLKV-LTHELRKIVSKDRDLYDKGL 419
Query: 351 RAYTSWVRFYSGYPRDVRQYLDPKLLHLGHAAKAFALRDTP 229
RA+ S VR Y+ + K L LG A A+AL P
Sbjct: 420 RAFVSHVRAYTKHHASF--IFRIKDLDLGQLATAYALLHLP 458
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TD+ ARG+DV +V LV+ Y PA+ +Y+H A+ F+ + +R +E
Sbjct: 317 TDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 376
Query: 513 Q 511
Q
Sbjct: 377 Q 377
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 39.1 bits (87), Expect = 7e-04
Identities = 25/80 (31%), Positives = 36/80 (45%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
T V ARGLDV + LV+ Y P DYVH AV F+ P + + +
Sbjct: 725 TSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDI- 783
Query: 513 QKRIRLRQDDESKCLEALRS 454
K +++ + K L+ L S
Sbjct: 784 AKALKMSKQPVPKELQTLAS 803
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
TDVAARG+D+P V V+ Y P +A YVH
Sbjct: 446 TDVAARGIDIPSVTHVIHYHVPHTADMYVH 475
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
T VA+RGLD+P V V+ Y P DYVH AV F N + L
Sbjct: 487 TAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKEL- 545
Query: 513 QKRIRLRQDDESKCLEALRSVA 448
I L Q+ +C L ++A
Sbjct: 546 ---IELLQEANQECPSFLIAMA 564
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
TDVA+RG+D+ +++V+ Y APA+ Y+H
Sbjct: 561 TDVASRGIDIKGIEVVINYEAPATHEVYLH 590
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 36.3 bits (80), Expect = 0.005
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNEADFVRYLE 514
TDVA+RG+DV + V Y P + DYVH A + + A R L
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELV 485
Query: 513 QKRIRLRQDDESKCLEALR 457
+QD + K E R
Sbjct: 486 SILSEAKQDIDPKLEEMAR 504
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
TDV RG+D+ RV++V+ Y P S Y+H
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 33.1 bits (72), Expect = 0.047
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -3
Query: 732 GQLWTFSGTRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMF 553
G++W L TD+ ARG+D V +V+ + P S Y+H AV F
Sbjct: 337 GEIWV-----LIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTF 391
Query: 552 LLPNEADFVRYL 517
+ ++++ +
Sbjct: 392 FTKEDGEYIKLI 403
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
+D+ ARG+DV V+ Y P S YVH
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
TDVA+RG+D+P + V+ Y P +VH
Sbjct: 403 TDVASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVH 604
+D+ RG+D+ V++V+ + P +A Y+H
Sbjct: 338 SDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAP 628
T+V ARG+DV +V+LV+ Y P
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMP 430
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 681 ARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLP 544
ARGLD V VL + P++ Y+H A+ F++P
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 428 NAPPSRYKPASNTPRTAQRNGSLGPVE 348
NAPP P TP T Q + S PV+
Sbjct: 354 NAPPYPSAPTRPTPPTVQTSSSAAPVD 380
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYV 607
T VA G+DVP +LV+++ + T YV
Sbjct: 430 TAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 437 RACNAPPSRYKPASNTPRTAQRNGSLGPVERT 342
R N+ +R PASN TA +NG+ +T
Sbjct: 137 RQLNSLAARVSPASNASATASKNGAKSSKRKT 168
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 519 LEQKRIRLRQDDESKCLEALRSV 451
LE+KR+RLR + + + E LRS+
Sbjct: 60 LEEKRLRLRDEKQKQQRERLRSM 82
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 282 KLLHLGHAAKAFALRDTPAALARRTKSDPKLKKERPVN 169
KL L H + L D L RR +DPK++ PV+
Sbjct: 36 KLQRLSHIQFSELLTDVADELQRRINNDPKVRFLPPVD 73
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 237 LSKRRL*PRDRGATVWDPSTDARREGSPSKTAPMM 341
++K R PR R + P +REGSPS P++
Sbjct: 308 IAKTRKTPRKRSPSSPVPLLAKKREGSPSLPIPIL 342
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = -3
Query: 396 EHTAHSSKEWLARASRAYTSWV---RFYSGYPRDVRQYLDP 283
E + H KEWL + + GY DV+ YL P
Sbjct: 266 EVSVHPFKEWLLNLQHTSPDLYEESKDFEGYENDVKPYLSP 306
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 573 YAPLVRYAQPCEHNQLRMRVRSTAXRGPLEARPSHGPPHPSCLTVFPKR 719
Y P++ Q + +R+ A R E PS+G C T F R
Sbjct: 248 YVPVINRGQKDIEGKKSIRIALEAERNFFETHPSYGSKAQYCGTPFLAR 296
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 693 TDVAARGLDVPRVDLVLQYCAPAS 622
T + GLD+ VD+++ Y A AS
Sbjct: 499 TSIGEEGLDIGEVDMIICYDASAS 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,262
Number of Sequences: 5004
Number of extensions: 64477
Number of successful extensions: 216
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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