Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_D09
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       35   8e-04
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.81 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   10.0 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -3

Query: 693 TDVAARGLDVPRVDLVLQYCAPASATDYVHXXXXXXXXXXXXXAVMFLLPNE-----ADF 529
           T VAARGLD+  V  V+ Y  P    +YVH             A  F  P E      D 
Sbjct: 508 TAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDL 567

Query: 528 VRYLEQ 511
           VR L+Q
Sbjct: 568 VRILKQ 573



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 179 DPSTDLQSTTKKKGRG 132
           D  TD++ T + KGRG
Sbjct: 70  DKKTDIEETGRGKGRG 85


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 556 HYRSTDTRRSSGTPNPVNI 612
           H RST+ R S+GTP   NI
Sbjct: 617 HTRSTEKRVSAGTPAAFNI 635


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 568 CCGNVSLTERSGFCS 524
           C G++S+T+  GFC+
Sbjct: 60  CSGDISVTKCEGFCN 74


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 568 CCGNVSLTERSGFCS 524
           C G++S+T+  GFC+
Sbjct: 60  CSGDISVTKCEGFCN 74


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 550 EKHYRSTDTRRSSGTPNPVNIISCGCG 630
           E+ +R+ D  R  G  +      CGCG
Sbjct: 556 ERTFRNLDENRPIGGDSLERFDFCGCG 582


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 213 SWRGPQGCLSKRRL*PRDR 269
           SWRG   CL    +  RDR
Sbjct: 251 SWRGNYSCLKVDLIFTRDR 269


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 213 SWRGPQGCLSKRRL*PRDR 269
           SWRG   CL    +  RDR
Sbjct: 302 SWRGNYSCLKVDLIFTRDR 320


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 213 SWRGPQGCLSKRRL*PRDR 269
           SWRG   CL    +  RDR
Sbjct: 251 SWRGNYSCLKVDLIFTRDR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,613
Number of Sequences: 438
Number of extensions: 5155
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)